PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018823-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 496aa    MW: 54762.7 Da    PI: 8.6011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018823-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057496123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C++C+k F r  nL+ H r H
  AHYPO_018823-RA 74 FICEICNKGFQRDQNLQLHRRGH 96
                     89*******************88 PP
2zf-C2H213.20.00027151173123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k +  +s+ k H +t+
  AHYPO_018823-RA 151 FKCEKCSKIYAVQSDWKAHSKTC 173
                      89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-57396IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-67396No hitNo description
SMARTSM003550.0227496IPR015880Zinc finger, C2H2-like
PfamPF121715.9E-57496IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8457496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-4139172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.74E-6146171No hitNo description
SMARTSM00355110151171IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MFQAALSNST LSEEACSFNP LILQNTSNIL TQQQKQEQPP PKNVKKKRSL PGNPDPDAEV  60
IALSPKTLLA KNRFICEICN KGFQRDQNLQ LHRRGHNLPW KLKQRNKNEV VKKKAYVCPI  120
TSCVHHHPSR ALGDLTGIKK HFCRKHGEKK FKCEKCSKIY AVQSDWKAHS KTCGTREYKC  180
DCGTLFSRKD SFVTHRAFCD ALAEENARLS SNPFSNPLFP PPPFSTLATS QNPNDSLFSF  240
TSPSSNPLSS IPWDPPPQNP NPLIQIKTEN PHVSPAPFFQ PPPLFSNPSK SLLTSMSLTS  300
SDMTTMSSAN FLMATALLQK AGTLCSIRNN SAMSTMVGGF DELGTLSSQV GSTTNMAQIL  360
PPQLSSSLNA NTTTETTTTT ITNHQSSDQL SIMLATWRKN NDGLTRDFLG LTAGDYNTNV  420
SDEMDRNMLK FTGELQYQMT AAYDHNNSSS SSILLKPEQQ QHDLVHHHHD HQEVDGFGFV  480
AAEPPTAAAS VSRWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35147211367Zinc finger protein JACKDAW
5b3h_F3e-35147211367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021764349.10.0protein indeterminate-domain 12-like
SwissprotO227591e-118IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0K9RK181e-171A0A0K9RK18_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010679126.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-106indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]