PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018814-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 279aa    MW: 32149.2 Da    PI: 7.1285
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018814-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind23.91.1e-071341230
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEE CS
     HSF_DNA-bind  2 Flkklyeiledeelkeliswsengnsfvv 30
                     F++k+ye+++d+++++lisw +++n+f+v
  AHYPO_018814-RA 13 FVMKTYEMVNDPSTDHLISWGRTNNTFLV 41
                     9********************999***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.3E-15972IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-151072IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-71141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-41341IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.3E-54372IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEQGSNVNII APFVMKTYEM VNDPSTDHLI SWGRTNNTFL VGFRKVDPDK WEFANQWFLR  60
GQKHLLKNIA RKKHSTTRPH RNHRDTEDHK LLVEIERIRE EQTTLDEELK NMNRRLQTTE  120
RRPKQMKTFL CKVVEDPDIV TRVIMESDHG KYINSVGEGG VASPEKRRRL QIKSSSTSSS  180
SIAQSNNSEE DEDTTLTAIS PSNNLVFLNR LGSSHHKNNC MSVNSNLLPL GFVPNLEHLQ  240
MDMENSTYIE HYPNYMPLKE DSFDPTYPFS LLNGSFII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165169KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021723663.11e-107heat stress transcription factor C-1-like
SwissprotQ9LV524e-50HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A0M4GX435e-66A0A0M4GX43_GOSHI; HSF31
TrEMBLA0A218XXX33e-66A0A218XXX3_PUNGR; Uncharacterized protein
STRINGXP_010688193.12e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-52heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]