PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018675-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 886aa    MW: 97404.1 Da    PI: 7.2025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018675-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-19293393199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  AHYPO_018675-RA 293 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPIKIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEG 384
                      99**************************555566778***************9989999999***9.********************876.777 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                      +lv++++++
  AHYPO_018675-RA 385 KLVMGFRKA 393
                      788877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-30290399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-20290392IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-23291392No hitNo description
SMARTSM010194.9E-23293394IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265293394IPR003340B3 DNA binding domain
PfamPF023621.2E-16293393IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128558608IPR011124Zinc finger, CW-type
PfamPF074962.8E-11563605IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MALKTCMNIV CGTTSSTEWK TGWSLRSGEL ANLCDKCGED SGWRECVTCA KRLHCGCIAS  60
LSLVELLDCG GVRCIACARN SGQSLNSGKC DGSGPCTVTE NNTGVKQSVK YKELNGNNQL  120
PMMQNPNSNV AFGLPKHEPL PSLVQAGTTW VPNLAQSSIG IFQKRPDKSM ISMPGKDNFV  180
PVDYPNLNIT LGVPPGNHQA TSNTFVDERD QRKISDTFHQ GFVSPNLFPT FPKLAFSSIA  240
ETNPSAMPQL RVARQPVEGR GRHQLLPRYW PRITDQELQQ ITGDSNCTIV PLFEKVLSAS  300
DAGRIGRLVL PKACAEAYFP PISQPEGLPI KIQDVKGKEW LFQFRFWPNN NSRMYVLEGV  360
TPCIQSMQLQ AGDTVTFSRM DPEGKLVMGF RKASNSASVQ DAASPAIRNA PLTSESFFSD  420
VIENLPVISG CSGFLQSVKG SADAHVNAMS RQLDSAGGIV RWHNSEKCNE RTEEGMSPTS  480
LLMLERKKSR NIGSKSKRLL IDNQDVLALR LTWEEVQGML RPPQSATPSV VMIEDYEFEE  540
YEEPPVFGKN SIFTGHSSGV VEQWVQCDNC AKWRRLPGDI LLPPKWACAD NSWDHSRCLC  600
SAPEELGPRE LENFRQLSKD STTKRRMVMP NRMTQEQESS GLNALATVAT LGDNTTDPGT  660
SSVATTTKHP RHRPGCSCIV CIQPPSGKGK HKSTCTCTVC MTVKRRFKTL MMRKKKRQSE  720
QEAEIALKNQ QQQNLVIQEN EKSEAEINNP FHLQLRRETE NDLQAGVGPP QINDCEGQTP  780
ISLLTKSGKS LNLNFHPERE EDLRLKTSES SLTNLLQLAS LPLEAYMKQN GLTSLSSEQQ  840
EQQAHSTSQL GKTSGDTSGN AVDDNPVGPG PDQVNPSTGS CEPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692714002131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1703714KRRFKTLMMRKK
2703716KRRFKTLMMRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766999.10.0B3 domain-containing transcription repressor VAL2-like
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0K9Q8H60.0A0A0K9Q8H6_SPIOL; Uncharacterized protein
STRINGXP_010683488.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]