PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018617-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

BES1

Protein Properties

Length: 701aa MW: 78873 Da PI: 5.9574

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018617-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	136.9	2e-42	73	207	2	133
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpleeaeaagssasaspes 92 s+r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+p + + + +++ AHYPO_018617-RA 73 VSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPSGDPLIPAAMPTQQMLP 166 689*****************************************************************97778888885555555555544444 PP DUF822 93 slqsslkssalaspvesysaspksssfpspssldsislasa 133 + ++ +s +++ + y++s + +s+p + + s+++ + AHYPO_018617-RA 167 QGPQQHQSASFKGVSTDYHTSVEYNSVPEKGVFMSTTSPYN 207 44456888888888888888888888877766555544333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	2.0E-38	74	211	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	1.26E-172	257	696	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	3.7E-191	260	695	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.9E-101	266	684	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	297	311	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	318	336	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	340	361	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-5	423	432	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.7E-65	433	455	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	506	525	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	540	556	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	557	568	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.7E-65	575	598	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-5	578	588	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00750	3.7E-65	615	637	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00842	2.3E-5	666	680	IPR001371	Glycoside hydrolase, family 14B, plant
PRINTS	PR00842	2.3E-5	681	695	IPR001371	Glycoside hydrolase, family 14B, plant

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MNMETGIQKL IGTSEDDEEE MGIDAKEEDD DEEGKNLAAS MMVNMNEGIA ISSNNNQFHY 60 QLQIQEPTNQ GGVSRRSRPL EEKERTKLRE RHRRAITARI LAGLRRHGNY NLRVRADIND 120 VIAALAREAG WVVLPDGTTF PSRSQGSRPS GDPLIPAAMP TQQMLPQGPQ QHQSASFKGV 180 STDYHTSVEY NSVPEKGVFM STTSPYNVSS SSLSHASSTV GSRAEGTDNY PLTSSSVDTM 240 GNKQVIDPSS RLQERDFAGT PYIPVYVMLS LGVINMKCEL TDPDGLLKQL RILKSINVDG 300 VMIDCWWGIV EAHVPQEYNW NGYKRLFQIV RDVKLKLQVV MSFHECGGNF RDDVCIPLPL 360 WVAEIGRSNP NIYFTDKEGR RNPECLSWGI DKERVLKGRT ALEVYFDFMR SFRIEFDEFF 420 EDGIISMIEV GLGPCGELRY PSFPVKHGWR YPGIGEFQCY DQYMLKSLRK AAEARGHAFW 480 AKGPTNAGFY NSRPQETEFF CDGGEYDGYH GRFFLNWYSQ VLVEHGDRIL SLAKLAFDGT 540 CIAAKISGVH WWYKTASHAA ELTAGFYNSC NRDGYAAVMS MLKKHGAALS FTTAEAAMLD 600 QSKDSSEALA DPEGLAWQVL NSVWDACIPV ASENSVPCHS REVYNKILEN AKPFSDPDGR 660 HVLSFKYNRL SFKLMERQNL MEFERFIKRM HGEAVLDPQI *

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MNMETGIQKL IGTSEDDEEE MGIDAKEEDD DEEGKNLAAS MMVNMNEGIA ISSNNNQFHY  60
QLQIQEPTNQ GGVSRRSRPL EEKERTKLRE RHRRAITARI LAGLRRHGNY NLRVRADIND  120
VIAALAREAG WVVLPDGTTF PSRSQGSRPS GDPLIPAAMP TQQMLPQGPQ QHQSASFKGV  180
STDYHTSVEY NSVPEKGVFM STTSPYNVSS SSLSHASSTV GSRAEGTDNY PLTSSSVDTM  240
GNKQVIDPSS RLQERDFAGT PYIPVYVMLS LGVINMKCEL TDPDGLLKQL RILKSINVDG  300
VMIDCWWGIV EAHVPQEYNW NGYKRLFQIV RDVKLKLQVV MSFHECGGNF RDDVCIPLPL  360
WVAEIGRSNP NIYFTDKEGR RNPECLSWGI DKERVLKGRT ALEVYFDFMR SFRIEFDEFF  420
EDGIISMIEV GLGPCGELRY PSFPVKHGWR YPGIGEFQCY DQYMLKSLRK AAEARGHAFW  480
AKGPTNAGFY NSRPQETEFF CDGGEYDGYH GRFFLNWYSQ VLVEHGDRIL SLAKLAFDGT  540
CIAAKISGVH WWYKTASHAA ELTAGFYNSC NRDGYAAVMS MLKKHGAALS FTTAEAAMLD  600
QSKDSSEALA DPEGLAWQVL NSVWDACIPV ASENSVPCHS REVYNKILEN AKPFSDPDGR  660
HVLSFKYNRL SFKLMERQNL MEFERFIKRM HGEAVLDPQI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6f9h_A	1e-143	262	700	9	449	Beta-amylase
6f9j_A	1e-143	262	700	9	449	Beta-amylase
6f9l_A	1e-143	262	700	9	449	Beta-amylase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021767065.1	0.0	beta-amylase 7-like isoform X1
Refseq	XP_021767066.1	0.0	beta-amylase 7-like isoform X1
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A0K9RFM4	0.0	A0A0K9RFM4_SPIOL; Beta-amylase
STRING	XP_010670436.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	AHYPO_018617-RA

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]