PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018558-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

M-type_MADS

Protein Properties

Length: 80aa MW: 9016.61 Da PI: 10.2753

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018558-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.1	4.1e-27	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ie+ks rqvtfskRr g++KKA ELSvLCd++va+++fs++g+lye AHYPO_018558-RA 9 KKIEDKSSRQVTFSKRRCGLMKKARELSVLCDVDVALLVFSNHGRLYE 56 78*********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.4E-28	1	61	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.758	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-35	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.98E-33	2	56	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-26	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 80 aa Download sequence Send to blast
MGRRKIEMKK IEDKSSRQVT FSKRRCGLMK KARELSVLCD VDVALLVFSN HGRLYELFSA 60 SSSSSSLRIV ENPKVCYCV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
1tqe_R	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
1tqe_S	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_A	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_B	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_C	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_D	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_E	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
6c9l_F	2e-18	1	71	1	71	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor active in inflorescence development and floral organogenesis.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010682731.1	2e-28	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X1
Refseq	XP_010682733.1	2e-28	PREDICTED: truncated transcription factor CAULIFLOWER A isoform X3
Swissprot	O04067	7e-23	AGL9_SINAL; Agamous-like MADS-box protein AGL9 homolog
TrEMBL	A2CHJ4	4e-27	A2CHJ4_BETVU; FLC-like 1 splice variant 1
TrEMBL	A2CHJ5	4e-27	A2CHJ5_BETVU; FLC-like 1 splice variant 2
TrEMBL	A2T9D0	4e-27	A2T9D0_BETVU; FLC-like 1 splice variant 1
TrEMBL	A2T9D1	4e-27	A2T9D1_BETVU; FLC-like 1 splice variant 2
STRING	XP_010682731.1	7e-28	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	8e-24	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_018558-RA

Publications ? help Back to Top
Bonhomme F,Sommer H,Bernier G,Jacqmard A Characterization of SaMADS D from Sinapis alba suggests a dual function of the gene: in inflorescence development and floral organogenesis. Plant Mol. Biol., 1997. 34(4): p. 573-82 [PMID:9247539]