PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018514-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 562aa    MW: 61422.2 Da    PI: 6.2339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018514-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS261.23.7e-801845622367
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalklfsevs 88 
                      ++ Ll++ +a++s+dl+++q +Larl+++ +sp+g+p+qR+a++f+eAL++  ++ ++++ ++ + ++++++ +     +++++ a+k+fs +s
  AHYPO_018514-RA 184 IDDLLRATQAFESNDLQQVQVILARLNQRlRSPAGKPLQRAAFFFKEALQHVTNNiTTTNNSSPVGSTPSRPPRltsfeVVQTIRAHKAFSAIS 277
                      5789************************99********************998883333344444333333333567889999*********** PP

             GRAS  89 PilkfshltaNqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                      Pi  fs ++aNqaIleav +g++ +HiiDfdi+ G++W++++++L +++++      +  lRiT+++++e     e + ++e+L++fA+ l+++
  AHYPO_018514-RA 278 PISLFSTFAANQAILEAVvDGSSFIHIIDFDIGFGGHWASFMRELVDKASDqaklatAMVLRITAIVPEE--FGIESKLVKENLTQFAQDLNLN 369
                      ****************963788*************************9944344444779********66..7788899*************** PP

             GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysal 267
                      f++++++  ++e l++++ ++ +gE+laV+l+  +++ +  s +++s ++++L  ++++sP  vvvv++e+    ++ sF + fl+ +++y+ +
  AHYPO_018514-RA 370 FHIDFVLIPTFEILSFKSVKFIEGEKLAVHLSPGVFNRF--SNNSRSGISKFLGDLRGISPSCVVVVDKEVGIdvGTVSFGQNFLNGMDFYTGI 461
                      *********************************999999..555556679********************65544999**************** PP

             GRAS 268 fdsleak.lpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                      ++s+e+  ++  +   +  + +E ++l+++i  +v ++ +  + r+    +Wre++ +aG++++ +s++a  qa++ll++ ++ g++v ++ g+
  AHYPO_018514-RA 462 MESIEMAaVGGFTgggDCLKRIETFVLRPRIFAAVEAAARVATGRR---TTWREAFVAAGLRTMGFSQFADFQADCLLKRAQVGGFQVAKRPGE 552
                      ****7663333335559999***************99988855555...59******************************************* PP

             GRAS 358 lvlgWkdrpL 367
                      ++l W+drpL
  AHYPO_018514-RA 553 MMLFWHDRPL 562
                      ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.472157549IPR005202Transcription factor GRAS
PfamPF035141.3E-77184562IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MKVPISTPQT CNTTTGKPLS TTNPSLNTTF HSSPTNNNYE PTSVLDLQRS PSPAAAAATT  60
KAVTPPSSDT TNTTHHPPTS TVDLDNLEGW DSILSELGLN DDSNSNNSKL NLLSQISPCD  120
SHINHVLPDF PSSQPFDHTQ PSLSLPSDYS NFCDFSYNQT LTPNFGPFDH HQTANVTGFG  180
LDFIDDLLRA TQAFESNDLQ QVQVILARLN QRLRSPAGKP LQRAAFFFKE ALQHVTNNIT  240
TTNNSSPVGS TPSRPPRLTS FEVVQTIRAH KAFSAISPIS LFSTFAANQA ILEAVVDGSS  300
FIHIIDFDIG FGGHWASFMR ELVDKASDQA KLATAMVLRI TAIVPEEFGI ESKLVKENLT  360
QFAQDLNLNF HIDFVLIPTF EILSFKSVKF IEGEKLAVHL SPGVFNRFSN NSRSGISKFL  420
GDLRGISPSC VVVVDKEVGI DVGTVSFGQN FLNGMDFYTG IMESIEMAAV GGFTGGGDCL  480
KRIETFVLRP RIFAAVEAAA RVATGRRTTW REAFVAAGLR TMGFSQFADF QADCLLKRAQ  540
VGGFQVAKRP GEMMLFWHDR PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-1721756236368GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667697.10.0PREDICTED: scarecrow-like protein 15
TrEMBLA0A0J8B5W80.0A0A0J8B5W8_BETVU; Uncharacterized protein
STRINGXP_010667697.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.14e-96GRAS family protein