PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018505-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19168.4 Da PI: 6.7802 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.4 | 3.4e-22 | 3 | 50 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n s rqvtfskRr g++KKA+E+++LC++e+ +i+fs+ +k++ + AHYPO_018505-RA 3 RIKNPSHRQVTFSKRRLGLFKKASEICTLCGMEAIIIVFSPGQKIFSF 50 8******************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-21 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.423 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-23 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-22 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-7 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MARIKNPSHR QVTFSKRRLG LFKKASEICT LCGMEAIIIV FSPGQKIFSF GHPSVESIVN 60 RYLSRNPSYP PQTSSSNAKK EDGDGDGDGD GDGDGVEQLQ SSTMNQLNSQ LTKILDLLEA 120 EKNRGENLNN LRRRSEPGFE SDSRSRSSQC QWWWEAPIDT LKLHELEILA V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021735544.1 | 6e-66 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0K9QCA5 | 7e-62 | A0A0K9QCA5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692431.1 | 3e-59 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-35 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018505-RA |