PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018502-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18134 Da PI: 10.5606 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i++ s qvtfskRr gi+KKA+E+++LC++++ +i+fs+ ++++ + AHYPO_018502-RA 17 KIKDPSHLQVTFSKRRLGIFKKASEICTLCGVQAIIIVFSPGNRIFSF 64 68999999*********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.7E-27 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.838 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-26 | 9 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-21 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-15 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MATKKPSRGR QKIKIAKIKD PSHLQVTFSK RRLGIFKKAS EICTLCGVQA IIIVFSPGNR 60 IFSFGHPNVE SIVDRYLNHN PLSCPPQTSS SNNAKNKNVD VGENSALNTL NSQITKTLDL 120 LSIEKNKGEV LKNLLRKSSQ WWWEAPIDNL GLHELEFVIV GK* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021735544.1 | 2e-67 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0K9QCA5 | 5e-63 | A0A0K9QCA5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692431.1 | 3e-65 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-47 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018502-RA |