PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018472-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 279aa    MW: 32002.5 Da    PI: 6.2362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018472-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.31.5e-831277106373
             GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                      +eg + +Hi+D+di++G+QWp++lqa+ +R+    + +p++RiTg g+    + + le+tg+rL+kfAe+lg++fef+ lv +++++++  e  
  AHYPO_018472-RA   1 MEGFSLIHILDMDIMHGVQWPPFLQAIKERSitlgRISPRIRITGAGP----DPTHLEKTGSRLRKFAESLGLEFEFHELVLQDCDEFDHTEAv 90 
                      688999*************************8876669**********....9***************************99999998654431 PP

             GRAS 195 ....rvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                           +++    +E +a+n+   lhrll+ + +++s  +++L+ +ksl+P+v+++ e eadhn++ Fl+rf++ale+y a+f+slea++p++s+
  AHYPO_018472-RA  91 tqaiMIRScdqvEEGVAINCGDYLHRLLK-EYDTRS-LRRFLSRMKSLNPRVLTIGEIEADHNHPLFLRRFVDALEHYGAMFESLEATIPPQSK 182
                      222244446679****************5.455555.699****************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSa 372
                      er+ vE+ +lg+ei++v+  eg++rrerh+++e+W+  l+++GFk++ ls + ++qaklllr ++ s+gy+++  +s++l+lgWk+ pL+svS+
  AHYPO_018472-RA 183 ERAAVEEGWLGEEIRDVIGEEGDRRRERHQKYESWEVVLRSSGFKSLGLSPFSVSQAKLLLRLHYpSEGYQLQvLNSNCLLLGWKNCPLYSVSS 276
                      *************************************************************************56799**************** PP

             GRAS 373 W 373
                      W
  AHYPO_018472-RA 277 W 277
                      * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.2E-811277IPR005202Transcription factor GRAS
PROSITE profilePS5098540.4991256IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEGFSLIHIL DMDIMHGVQW PPFLQAIKER SITLGRISPR IRITGAGPDP THLEKTGSRL  60
RKFAESLGLE FEFHELVLQD CDEFDHTEAV TQAIMIRSCD QVEEGVAINC GDYLHRLLKE  120
YDTRSLRRFL SRMKSLNPRV LTIGEIEADH NHPLFLRRFV DALEHYGAMF ESLEATIPPQ  180
SKERAAVEEG WLGEEIRDVI GEEGDRRRER HQKYESWEVV LRSSGFKSLG LSPFSVSQAK  240
LLLRLHYPSE GYQLQVLNSN CLLLGWKNCP LYSVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-427278111375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690197.11e-157PREDICTED: scarecrow-like protein 18
TrEMBLA0A0K9S2J71e-141A0A0K9S2J7_SPIOL; Uncharacterized protein
STRINGXP_010690197.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-86GRAS family protein