PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018402-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 256aa MW: 28524.7 Da PI: 8.9541 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.6e-05 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk+Fs+ L H +H AHYPO_018402-RA 55 YECKTCGKTFSSFQALGGHRASH 77 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.2 | 0.00055 | 173 | 195 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H AHYPO_018402-RA 173 HECTLCGAEFSSGQALGGHMRRH 195 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.43E-6 | 53 | 82 | No hit | No description |
Pfam | PF13912 | 6.4E-13 | 54 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 55 | 77 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.025 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.78 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.35E-6 | 170 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.7E-4 | 171 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-12 | 172 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDCQDEVINY TNSMQQSVVK GKSRELRAPI LRDFSTKFKS RKYIEEGGKS GYYVYECKTC 60 GKTFSSFQAL GGHRASHKKP KNTKHEDYNN NHDNKINILI SSGKTSRSNY SKYSSLILSS 120 DDEEPPFKLE SKNNNNNNNN NIICSSTSLS LQLTNRALYS GVTNHQNNKG RVHECTLCGA 180 EFSSGQALGG HMRRHRGSNT TVASSIATLP EMSKDMIKIP QSTNTSVLSF DLDLNLPALP 240 EDNVRVDHQK ESEFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010684077.1 | 8e-67 | PREDICTED: zinc finger protein ZAT5 | ||||
TrEMBL | A0A0K9Q9V4 | 1e-64 | A0A0K9Q9V4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010684077.1 | 3e-66 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 2e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018402-RA |