PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018297-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

CAMTA

Protein Properties

Length: 924aa MW: 105278 Da PI: 7.9795

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018297-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.4	8.1e-51	29	146	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 +ke k+rwl+++ei+aiL n++ ++++ ++ + pk g+++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np+f AHYPO_018297-RA 29 MKEaKSRWLRPNEIHAILFNYTYFDIKVKPVSLPKGGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGAEERIHVYYAHGEDNPSF 122 45559*************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 rrcywlL+++le++vlvhy+e++ AHYPO_018297-RA 123 VRRCYWLLDKALEHVVLVHYRETQ 146 *******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.64	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-72	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.2E-44	31	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.67E-14	378	464	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.01E-18	502	672	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-18	560	673	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.53E-17	560	670	No hit	No description
PROSITE profile	PS50297	15.857	569	670	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.6E-8	583	673	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.461	611	643	IPR002110	Ankyrin repeat
SMART	SM00248	9.9E-6	611	640	IPR002110	Ankyrin repeat
SMART	SM00248	3300	650	679	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.25E-6	724	825	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	6.504	759	785	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	91	774	796	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	1.9E-4	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.377	798	822	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.7E-5	799	819	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	13	877	899	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.535	879	907	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MENRSNGLLA GCEIHGFRTM EDLDIFNIMK EAKSRWLRPN EIHAILFNYT YFDIKVKPVS 60 LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGAEERIH VYYAHGEDNP 120 SFVRRCYWLL DKALEHVVLV HYRETQEVSS ITPVNSSIHS DLSDHSASQL LSKGNNRLVD 180 QVYYPSTKEF GDSGDSINVT NHEIRLQEIN TLDWDELLMS NDLNQETIAT EGQSPYFQQD 240 KGLAKNFSEE NGMFSLTRNS QADVLSSRSS INPIVEICST HMGDMSLPLL KVQNDQKEES 300 RIYNTGTVGA GDFSDNMAKD GLLSQDSFGR WINEIIVDSP ESVEDPTYES SGATSHGSLV 360 SSGAVNNEGP VPSQIFCITD VSPSWAYSTE ETKILVVGFF HQEYQQLAKS NVYCVFGDTL 420 YPAEMIQAGV FRCLVSPHSC GFVNFFLSFD GRTPISQVLT FEFRAPASTN VVRREKSDWD 480 MFRIQIRLAH LLYSTSKSLD ILSNKISPTA LKEGKKFALK HSNISDNWAY FSKLIEYGKI 540 SFERAKDSLF ELSMKSRLKE WLLERVVDGS KILERDSEGQ GVLHLCAILG YKWAVNQFSC 600 CGLSLDFRDK FGWTALHWAA YYGRERMVAI LLSTGAKPNL VTDPTSENPG GCTAADLAAK 660 QGFEGLAAYL SEKALVQQFE DMRIAGNAVG SLETHIYESS TTSCVTEDDL YLKDTLAAYR 720 TAADAAARIQ VAFRENTLKK RTKDIEVSNP EREARYIVAA MKIQHAYRKY EVRKQMVAAA 780 RIQHRFKTWK LRKEFLNMRQ KAIKIQSVFR GFRVRREYRK ICWSVGVLEK AILRWRRKRR 840 GLCGLKIDLN EPADDQRSDS DTEEDFYRAS RKQAEERVEK AVVRVQAMFR SKQAQQEYRR 900 MKLAHTQAQL GYVEAIDPYD FLE*

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MENRSNGLLA GCEIHGFRTM EDLDIFNIMK EAKSRWLRPN EIHAILFNYT YFDIKVKPVS  60
LPKGGTIVLF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGAEERIH VYYAHGEDNP  120
SFVRRCYWLL DKALEHVVLV HYRETQEVSS ITPVNSSIHS DLSDHSASQL LSKGNNRLVD  180
QVYYPSTKEF GDSGDSINVT NHEIRLQEIN TLDWDELLMS NDLNQETIAT EGQSPYFQQD  240
KGLAKNFSEE NGMFSLTRNS QADVLSSRSS INPIVEICST HMGDMSLPLL KVQNDQKEES  300
RIYNTGTVGA GDFSDNMAKD GLLSQDSFGR WINEIIVDSP ESVEDPTYES SGATSHGSLV  360
SSGAVNNEGP VPSQIFCITD VSPSWAYSTE ETKILVVGFF HQEYQQLAKS NVYCVFGDTL  420
YPAEMIQAGV FRCLVSPHSC GFVNFFLSFD GRTPISQVLT FEFRAPASTN VVRREKSDWD  480
MFRIQIRLAH LLYSTSKSLD ILSNKISPTA LKEGKKFALK HSNISDNWAY FSKLIEYGKI  540
SFERAKDSLF ELSMKSRLKE WLLERVVDGS KILERDSEGQ GVLHLCAILG YKWAVNQFSC  600
CGLSLDFRDK FGWTALHWAA YYGRERMVAI LLSTGAKPNL VTDPTSENPG GCTAADLAAK  660
QGFEGLAAYL SEKALVQQFE DMRIAGNAVG SLETHIYESS TTSCVTEDDL YLKDTLAAYR  720
TAADAAARIQ VAFRENTLKK RTKDIEVSNP EREARYIVAA MKIQHAYRKY EVRKQMVAAA  780
RIQHRFKTWK LRKEFLNMRQ KAIKIQSVFR GFRVRREYRK ICWSVGVLEK AILRWRRKRR  840
GLCGLKIDLN EPADDQRSDS DTEEDFYRAS RKQAEERVEK AVVRVQAMFR SKQAQQEYRR  900
MKLAHTQAQL GYVEAIDPYD FLE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	RKKLRNFRKDGHNWKKKK
2	72	87	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021730253.1	0.0	calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A0K9QKS6	0.0	A0A0K9QKS6_SPIOL; Uncharacterized protein
STRING	XP_010671665.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	AHYPO_018297-RA

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]