PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018237-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 216aa MW: 23901.5 Da PI: 8.0305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018237-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ Fs++ L H++ H AHYPO_018237-RA 55 FQCSYCSRKFSSSQALGGHQNAH 77 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.11E-6	51	82	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.9E-4	53	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	5.1E-7	54	78	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.697	55	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MFKFIEHPYN YFPTNPTNTT SIFTEIIPTN TKSKKPRRSS SSSSSSFNNN NNRVFQCSYC 60 SRKFSSSQAL GGHQNAHKIE RAAAKQLKIN NNNINNASFD EEMGSTSSTI ECNTGQFSYN 120 PGFHGDGYYP FNKYGNGYGF YNGFGYYPCN IPPEQPYYFD GAVNTSCDCD CGAQIVGPIA 180 SPLMVGPMID NPLSPPMSVE NQQMKKQKLD LSLTL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	2e-13	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	AHYPO_018237-RA