PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_018184-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 525aa MW: 59502.9 Da PI: 6.7621

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_018184-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	4.9e-25	65	151	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y+eYAk++GF++++++s++skr++ +++++f Cs++g + e + ++r+ +++t+Cka+++vk++k gkw ++++ +eHnHel p AHYPO_018184-RA 65 HYQEYAKSMGFTTSIKNSRRSKRSKDFIDAKFACSRYGVTPEFDAG---SSRRPGVKKTDCKASMHVKRNKYGKWIIHEFIKEHNHELLP 151 6*************************************998877...77788899****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-22	65	151	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.778	249	285	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.7E-4	257	281	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-7	260	287	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MDDQRQDICH DEGSSRDMVE LVNVVHDRDG GTVVSAMSDF LLEGDVDIEP HSDLQFESYE 60 AAYKHYQEYA KSMGFTTSIK NSRRSKRSKD FIDAKFACSR YGVTPEFDAG SSRRPGVKKT 120 DCKASMHVKR NKYGKWIIHE FIKEHNHELL PALAYYFRID RNVKLVEKNN IDILHAVSER 180 TKKLYVDMSR QSASLINHGS TRDTLGSQFD KGNRLVEVLG VVGCHPKKEA EDGTSVTYRV 240 EDCEKEETFF VVWDETKCQV SCICRMFEYQ GFLCRHSMLA LQISGISCIP IQYILERWKK 300 DAKSRSLMVE GTQRLQTRVQ RYVALCKQAI ELSEEGSLSQ VSHDIALRTL VDTLKKCVGV 360 NNMNRSIMEA GDTFCAYDID EAYQGGMLSR TSKKKNVVKK RKIASETDLM LTDAEDSFHH 420 MAHPNSDGIS FNGYYGSQQN VPGLVQLNLM EPPHDSYFVD QDSMQGLGQL HSVVPTHEGF 480 LGSQHSVHGL GHMDFRSSSS FSYSLQNENN LRTTQLHEDA SRNT*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MDDQRQDICH DEGSSRDMVE LVNVVHDRDG GTVVSAMSDF LLEGDVDIEP HSDLQFESYE  60
AAYKHYQEYA KSMGFTTSIK NSRRSKRSKD FIDAKFACSR YGVTPEFDAG SSRRPGVKKT  120
DCKASMHVKR NKYGKWIIHE FIKEHNHELL PALAYYFRID RNVKLVEKNN IDILHAVSER  180
TKKLYVDMSR QSASLINHGS TRDTLGSQFD KGNRLVEVLG VVGCHPKKEA EDGTSVTYRV  240
EDCEKEETFF VVWDETKCQV SCICRMFEYQ GFLCRHSMLA LQISGISCIP IQYILERWKK  300
DAKSRSLMVE GTQRLQTRVQ RYVALCKQAI ELSEEGSLSQ VSHDIALRTL VDTLKKCVGV  360
NNMNRSIMEA GDTFCAYDID EAYQGGMLSR TSKKKNVVKK RKIASETDLM LTDAEDSFHH  420
MAHPNSDGIS FNGYYGSQQN VPGLVQLNLM EPPHDSYFVD QDSMQGLGQL HSVVPTHEGF  480
LGSQHSVHGL GHMDFRSSSS FSYSLQNENN LRTTQLHEDA SRNT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675666.1	1e-161	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Refseq	XP_019104688.1	1e-161	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	3e-95	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A0B0NR12	0.0	A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein
STRING	XP_010675660.1	1e-160	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	8e-88	FAR1 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_018184-RA

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]