PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018172-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HSF
Protein Properties Length: 506aa    MW: 55851 Da    PI: 4.4682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018172-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y++++d+++++++sws+++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  AHYPO_018172-RA  27 FLCKTYDMVDDPATDSVVSWSTTNNSFIVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLK 111
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+k 
  AHYPO_018172-RA 112 SITRRKP 118
                      ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3919111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6423116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3623116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.3E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MESSSTTTIS GGNAPTPMSN VNGPPPFLCK TYDMVDDPAT DSVVSWSTTN NSFIVWNPPE  60
FARDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL KSITRRKPAH  120
GHGNQHQQQA PQQTSSVGAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR QQQQTTDNQL  180
QTMVQRLQGM EQRQQQMMSF LAKAVQSPGF LAQFVQQQTE SNRCISDANK KRRLKQDGVA  240
ESETSTLPDG QIVKYQPLGK DSTHAMLHQL RKMDANFNSN SDDFYSGDSS STSALDSETP  300
ANRVSGVTLQ EASPTSVPAY STSAANIAAV SRDAVVSEIE SSPVITRAEN LPIPELSEIS  360
GLVTPESISS VSLPQTTAVI PEIPALPDLV QNSVNISGGN FMLDETGDNE FMDLSSVPLE  420
GTSSIDIDKL SPPDIDALLD DASWEQFLDR NVMSFDDRNG PDFPNIDIST EGTEVQPLEN  480
GWSKHQRMDQ LTEQMGLLNS DNTLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-261811611120Heat shock factor protein 1
5d5u_B4e-262511627129Heat shock factor protein 1
5d5v_B4e-262511627129Heat shock factor protein 1
5d5v_D4e-262511627129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228235NKKRRLKQ
2229234KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768224.10.0heat shock factor protein HSF8-like
RefseqXP_021768225.10.0heat shock factor protein HSF8-like
SwissprotQ401521e-166HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0K9RJS20.0A0A0K9RJS2_SPIOL; Uncharacterized protein
STRINGXP_010677345.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-124heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]