PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018107-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 296aa    MW: 33151.4 Da    PI: 7.6985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018107-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.14.2e-08114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cgk F+r  nL+ H+r H
  AHYPO_018107-RA 114 HTCKICGKGFKRDANLRMHMRAH 136
                      79*******************99 PP
2zf-C2H215.64.5e-05202225123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      ++C+ C+ ksFs  s+Lk+H++++
  AHYPO_018107-RA 202 FSCNRCNkKSFSVLSDLKSHMKNC 225
                      89********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.49E-7109137No hitNo description
Gene3DG3DSA:3.30.160.606.5E-7114136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.8E-5114136IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.113114141IPR007087Zinc finger, C2H2
SMARTSM003555.3E-4114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SMARTSM0035542164197IPR015880Zinc finger, C2H2-like
SMARTSM0035558202223IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSDSNTLRLP LPPPEYSTAD NPLKNLSAIQ SRVDSLSRIL SNSVNTNTPL PKTDSDNITA  60
ELISAVHHII INGAALIASS SSSNGPGSIT ISDGDEDIQI IELDVEDITS DNSHTCKICG  120
KGFKRDANLR MHMRAHGDQF KTLESLSNPK NIKYSHNQGR KTRFSCPYIG CNRNKNHENF  180
RSLKSAICVK NHFKRFHCPK MFSCNRCNKK SFSVLSDLKS HMKNCVENLK KWEYCSCGLR  240
FGSRDELFGH LSMCEGHMPQ NSNFDSGFFD EFGLIKDENQ EMSLWSSIED ITHLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861068.11e-117protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A0K9Q7M81e-115A0A0K9Q7M8_SPIOL; Uncharacterized protein
STRINGXP_010680535.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-57C2H2 family protein