PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018071-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 540aa    MW: 59304.3 Da    PI: 6.4252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018071-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44e-14245304155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  AHYPO_018071-RA 245 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARSYDLAALKYWG 304
                      57*******************666664478446*************************98 PP
2AP250.74.3e-16347398155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++grW A+I   +     +k  +lg+f t+eeAa+a++ a+ k++g
  AHYPO_018071-RA 347 SIYRGVTRHHQQGRWQARIGRvV-G---NKDLYLGTFATEEEAAEAYDIAAIKFRG 398
                      57****************99944.3...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-23245314No hitNo description
SuperFamilySSF541717.19E-17245314IPR016177DNA-binding domain
PfamPF008475.0E-11245304IPR001471AP2/ERF domain
PROSITE profilePS5103219.137246312IPR001471AP2/ERF domain
SMARTSM003805.7E-29246318IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-15246313IPR001471AP2/ERF domain
PRINTSPR003673.7E-6247258IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18347407IPR016177DNA-binding domain
CDDcd000181.22E-11347406No hitNo description
PfamPF008476.8E-10347398IPR001471AP2/ERF domain
PROSITE profilePS5103219.098348406IPR001471AP2/ERF domain
SMARTSM003801.3E-30348412IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18348406IPR001471AP2/ERF domain
PRINTSPR003673.7E-6388408IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MAPAADAANN WLSFSLSPME IYHTPQILPT HPITNNSHNY YLDSFYTPDW GNQKANMGMY  60
TDYLVDQQID NNNPLQTTST VPKLEDFFGG DHLHTTSYNS QTETTTQDSS SQLTHLYESN  120
THQNSVPNYF SNHHTDQYQD LKAMTPSTNT GFQADFSANS GSEVDDSAAT QLGCGANGAE  180
FVGHSIDSTQ TELVPSYATV TDGNNGGSLS LSVVPQSVDK SMVGVGGDSE KCVKKISDTF  240
GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEEK AARSYDLAAL  300
KYWGPTATTN FPISNYSNEL EEMKHVTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR  360
WQARIGRVVG NKDLYLGTFA TEEEAAEAYD IAAIKFRGVN AVTNFEMKRY DVQAILNSNL  420
PVGGAAKRLK LATEAADQKP TLCLDQQSQS SNGSCGGMSN TINFAAVQSS IPTIASTMPY  480
DTMTAMFHHN LLQHLHSNGG AQAVASDSYG SGVSSMASPT MLLMPQTPAE FYIWPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680360.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-149AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A0R0IAV80.0A0A0R0IAV8_SOYBN; Uncharacterized protein
TrEMBLA0A445J3I40.0A0A445J3I4_GLYSO; AP2-like ethylene-responsive transcription factor AIL6
STRINGXP_010680360.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-144AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]