PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017866-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 25013.2 Da PI: 8.21 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H AHYPO_017866-RA 95 YKCETCDKVFRSYQALGGHRASH 117 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C ++Fs+ L H r+H AHYPO_017866-RA 148 YECPICLRVFSSGQALGGHKRSH 170 99******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.44E-10 | 93 | 170 | No hit | No description |
Pfam | PF13912 | 4.8E-12 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.72 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-12 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.014 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKSHIMNLPS SSSSSTTFSS SSFYDSDQEK IFDDKTSEIE SFKKNPSGKR SKTKRVILKS 60 YDDQVKEVKS DEDLAICLMM MSRDTRSNSI KKKIYKCETC DKVFRSYQAL GGHRASHKKN 120 RVIGNNLIIE EIKEMGIDYD DENEKKIYEC PICLRVFSSG QALGGHKRSH GVLDYSPRKK 180 IMVINTTNQR LIDLNLPAPL DFDDDQQQIS QIHDHDFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 54 | KRSKTKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191617.1 | 8e-42 | C2H2-like zinc finger protein | ||||
Swissprot | Q9M202 | 7e-43 | ZAT9_ARATH; Zinc finger protein ZAT9 | ||||
TrEMBL | Q4U316 | 2e-42 | Q4U316_SILLA; Cys2/His2 zinc-finger transcription factor | ||||
STRING | AT3G60580.1 | 3e-41 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-44 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017866-RA |