PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017838-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 182aa MW: 20747.9 Da PI: 10.3007 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 17.2 | 9.1e-06 | 32 | 49 | 39 | 56 |
S-HHHHHHHHHHHHHHHH CS Homeobox 39 LterqVkvWFqNrRakek 56 + +qV +WFqNrR+ + AHYPO_017838-RA 32 IHMKQVWNWFQNRRYALR 49 7889**********9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-6 | 23 | 49 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-4 | 32 | 54 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MRFFLLIPVL VYLIVSSFEC SNSPERSGKS TIHMKQVWNW FQNRRYALRS KLVKSPGNSY 60 LPQNPQSGVA PVRSVPPVPQ QTTVSSGRIS LISKHRDRGS LLLIGLENMN KLELLKKSPI 120 PILGHNVVRN ASESPPMEFE AKSARDGAWY DVQEFLSHRY LETEKEDMKE WIRHFEVGKA 180 L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010668440.1 | 1e-48 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_010675448.1 | 1e-45 | PREDICTED: putative uncharacterized protein DDB_G0290521 | ||||
TrEMBL | A0A0J8B465 | 3e-47 | A0A0J8B465_BETVU; Uncharacterized protein | ||||
STRING | XP_010668440.1 | 5e-48 | (Beta vulgaris) | ||||
STRING | XP_010675448.1 | 5e-45 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.2 | 5e-26 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017838-RA |