PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017799-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 233aa MW: 26858.8 Da PI: 8.7189 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.5 | 1.3e-10 | 5 | 85 | 25 | 90 |
FAR1 25 ngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++++ + Cs g r++ekk + +++r+ a trtgC+a+++ kk++ g +ev++ + HnH+++ AHYPO_017799-RA 5 TSDVIEKYYLCSAAGIRNTEKKFvkgtqshdtectektKIRKERRVAITRTGCNACIRAKKNTFGLFEVIDHVVAHNHQMT 85 5679999************99999**********99766666678899******************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-7 | 5 | 85 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MKQGTSDVIE KYYLCSAAGI RNTEKKFVKG TQSHDTECTE KTKIRKERRV AITRTGCNAC 60 IRAKKNTFGL FEVIDHVVAH NHQMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES 120 YRLLSAEAGG EHTIGHTVKD HLNFCHKLKM KKIDGGDANS VIEQLDQKLS DNPDFFYRVR 180 LDEEGKICCI FWRDAMMLED YKIFGDVVVM DTSYKKNKYN LICALFVGIN NH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021742789.1 | 9e-92 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_021865097.1 | 1e-91 | protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_010665579.1 | 1e-85 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-34 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017799-RA |