PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017426-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

CAMTA

Protein Properties

Length: 992aa MW: 111416 Da PI: 6.0734

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017426-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.2	1.2e-56	22	136	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 ++rwl++ ei++iL n++k+++++e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKv++v++l+cyYah+++n+ fqrr AHYPO_017426-RA 22 ARHRWLRAAEICEILRNHQKFQISSEPPNQPSSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVDSVDMLHCYYAHGDDNECFQRR 115 59****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 +ywlLeee+ +iv+vhylevk AHYPO_017426-RA 116 SYWLLEEEFMHIVFVHYLEVK 136 ****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	79.701	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-77	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.8E-50	22	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.4E-7	391	508	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.3E-5	421	506	IPR002909	IPT domain
SuperFamily	SSF81296	6.38E-16	421	506	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.0E-14	579	722	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.443	591	706	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.22E-14	592	699	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.19E-7	623	694	No hit	No description
SuperFamily	SSF52540	2.42E-8	811	864	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.016	813	835	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.553	814	843	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.7E-4	815	834	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.006	836	858	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.523	837	861	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.6E-4	840	858	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071275	Biological Process	cellular response to aluminum ion
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MANGGFINPG IRLDIQQLQL DARHRWLRAA EICEILRNHQ KFQISSEPPN QPSSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTIKEAHEK LKVDSVDMLH CYYAHGDDNE CFQRRSYWLL 120 EEEFMHIVFV HYLEVKGNRN SSRETEPVIS TSQISNSMSS SVSNSYNDAF TGNAGSPSAA 180 SSLNSYDEIE SEDNHQAISR YPSPSFSHVE ARFENNKMGA IINSTFLPSY QEEYKGPQPL 240 DYVSLVQQGV GTKDDNQFKT LDLASWEEVF QQSTRSSENL QANPLVSAAP LVGSTDVFNE 300 NFSLFLDAGF GVDSMEGGSL ASYLPNYNPL STEFPDNTNV SVIAKHPLLG NILMGEGLQK 360 VDSFSKWMSK EFSGVDDLYL NSSLDYSWQN IETSTSVDDP SIQHENYTVS PSIGYDQLFD 420 IQDFSPSCSS NDTETKVVIT GKFLVDPAEV FKYNWSCMFG EVEVPAEVLG NGILCCYAPL 480 HTAGRVPFYV TCSNRFACSQ VREFEYLLDS QRAINRSVSG DSIMEQQLWH RLQKLLSLKN 540 PANLDPVTKS FRKNEPIFSK ILLLMEDELC LGVEQQLKEK VVSWLFDKVS EDGKGPNVLD 600 ELGQGLLHLA AALGLDWIIP PTVATGVSVN FRDVCGWTAL HWAAFYGRET TVALLVALEA 660 ASGAVTDPSP EFPLGRTAAD LASANGFKGI SGFLAEHSLT AHLETLTMAD RKLDTPLDDS 720 MNKAVHTMRE NVATPGIEGD GSDLPLKDSL AAVRNATQAA GRIHQVFRMQ SFQRKHVSKG 780 AGPFGNYESL LSDEQLLLLV SSKIQRPGHP DEQTHSAAIR IQKKYRGYKK RKEFLIIRER 840 VVRIQAHVRG HQVRKRYKTV VWSVGILEKV ILRWRRRGTG LRGFRPDALY KASSTLGTQD 900 VQKISSEDDD YDFLKDGRKQ TEERLQKALV RVKSMVQYPD GRAQYRRILT AVEGFQKNQV 960 HENTRKNSED VPVEGEEDKI YVESLLDVTF E*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MANGGFINPG IRLDIQQLQL DARHRWLRAA EICEILRNHQ KFQISSEPPN QPSSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTIKEAHEK LKVDSVDMLH CYYAHGDDNE CFQRRSYWLL  120
EEEFMHIVFV HYLEVKGNRN SSRETEPVIS TSQISNSMSS SVSNSYNDAF TGNAGSPSAA  180
SSLNSYDEIE SEDNHQAISR YPSPSFSHVE ARFENNKMGA IINSTFLPSY QEEYKGPQPL  240
DYVSLVQQGV GTKDDNQFKT LDLASWEEVF QQSTRSSENL QANPLVSAAP LVGSTDVFNE  300
NFSLFLDAGF GVDSMEGGSL ASYLPNYNPL STEFPDNTNV SVIAKHPLLG NILMGEGLQK  360
VDSFSKWMSK EFSGVDDLYL NSSLDYSWQN IETSTSVDDP SIQHENYTVS PSIGYDQLFD  420
IQDFSPSCSS NDTETKVVIT GKFLVDPAEV FKYNWSCMFG EVEVPAEVLG NGILCCYAPL  480
HTAGRVPFYV TCSNRFACSQ VREFEYLLDS QRAINRSVSG DSIMEQQLWH RLQKLLSLKN  540
PANLDPVTKS FRKNEPIFSK ILLLMEDELC LGVEQQLKEK VVSWLFDKVS EDGKGPNVLD  600
ELGQGLLHLA AALGLDWIIP PTVATGVSVN FRDVCGWTAL HWAAFYGRET TVALLVALEA  660
ASGAVTDPSP EFPLGRTAAD LASANGFKGI SGFLAEHSLT AHLETLTMAD RKLDTPLDDS  720
MNKAVHTMRE NVATPGIEGD GSDLPLKDSL AAVRNATQAA GRIHQVFRMQ SFQRKHVSKG  780
AGPFGNYESL LSDEQLLLLV SSKIQRPGHP DEQTHSAAIR IQKKYRGYKK RKEFLIIRER  840
VVRIQAHVRG HQVRKRYKTV VWSVGILEKV ILRWRRRGTG LRGFRPDALY KASSTLGTQD  900
VQKISSEDDD YDFLKDGRKQ TEERLQKALV RVKSMVQYPD GRAQYRRILT AVEGFQKNQV  960
HENTRKNSED VPVEGEEDKI YVESLLDVTF E*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00043	PBM	Transfer from AT5G64220	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690491.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X1
Refseq	XP_010690492.1	0.0	PREDICTED: calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0K9QYQ2	0.0	A0A0K9QYQ2_SPIOL; Uncharacterized protein
STRING	XP_010690491.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.3	0.0	ethylene induced calmodulin binding protein

Link Out ? help Back to Top
Phytozome	AHYPO_017426-RA

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]