PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017406-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 365aa    MW: 41725.6 Da    PI: 4.5581
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017406-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.3e-10295342653
                      S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +++k q+e+Le+++++++ p+ +++  + + ++L+ r+V  WF  +Ra
  AHYPO_017406-RA 295 RLKKVQVETLENVYRRTKRPTNAMISSIVHVTNLPRRRVVKWFEEKRA 342
                      57899******************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.475287347IPR001356Homeobox domain
SuperFamilySSF466891.58E-9290345IPR009057Homeodomain-like
CDDcd000861.10E-7290342No hitNo description
SMARTSM003892.0E-5293351IPR001356Homeobox domain
PfamPF000461.4E-7295342IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-9295344IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002229Biological Processdefense response to oomycetes
GO:0009414Biological Processresponse to water deprivation
GO:0009682Biological Processinduced systemic resistance
GO:0009787Biological Processregulation of abscisic acid-activated signaling pathway
GO:0010118Biological Processstomatal movement
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000071Biological Processregulation of defense response by callose deposition
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEINISFIHN TSNSNSSISL SSFSSSSYPS LQPPYNHFLS YNPKPTNIYL PRVPPRRSVL  60
SLARRRNNSS RPLSSKKNKS QKKADLNKED ILDEDAFEAL FKQLEEDLKQ DESLLDDLED  120
EISEEELAML ERELEEALAE DDTLSELLNL TSNVAEEREE GKEEMGDEAA EEYTADEEQE  180
DEEEEEPVNL KGWQLKRLAY ALKVGRRKTN IKSLAAEICL DRSIVLELLR DPPPNLLMLS  240
ATLPDKPEPP VAIPDSREIL SFPSEAEVIA DTSEPEPKVE TPIHVLQNSW SAQKRLKKVQ  300
VETLENVYRR TKRPTNAMIS SIVHVTNLPR RRVVKWFEEK RADEGVPDEH RPYRRKSSES  360
VFTQ*
Functional Description ? help Back to Top
Source Description
UniProtMay modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250|UniProtKB:Q70Z19, ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769, ECO:0000269|PubMed:20836879, ECO:0000269|PubMed:21564353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269|PubMed:15923348, ECO:0000269|PubMed:19175769}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670653.11e-140PREDICTED: protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
SwissprotQ8H0V51e-75OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBLA0A0K9RB511e-125A0A0K9RB51_SPIOL; Uncharacterized protein
STRINGXP_010670653.11e-139(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.16e-69overexpressor of cationic peroxidase 3
Publications ? help Back to Top
  1. García-Andrade J,Ramírez V,López A,Vera P
    Mediated plastid RNA editing in plant immunity.
    PLoS Pathog., 2013. 9(10): p. e1003713
    [PMID:24204264]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gamir J,Pastor V,Kaever A,Cerezo M,Flors V
    Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina.
    Plant J., 2014. 78(2): p. 227-40
    [PMID:24506441]