PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017310-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 547aa    MW: 61829.7 Da    PI: 5.8497
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017310-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.27.3e-1281755462374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +e+L+ cA+a+s++dl+ a++l++ l++++s +g+p+qRl ay++e+L+ar+ +s+ ++yk+l++ + +   s+e l++++++++v+P++kf++
  AHYPO_017310-RA 175 QEVLYLCAQAISDNDLSSAETLMNALENMVSINGTPIQRLGAYMLEGLRARIKSSGYTIYKKLRCDQPT---SKELLTYMHTLYQVCPYFKFAY 265
                      6899****************************************************************9...99******************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv..pfefnvlvakr 185
                      +  N+ I ea+ +++ +HiiDf+i++G+QW +Ll++La+Rp+gpp +RiTgv++++s   +   l  ++++L+  A++++v  pfefn+ +a +
  AHYPO_017310-RA 266 VSSNSIIQEAIGNDRSIHIIDFQIGMGTQWTSLLHSLANRPGGPPLVRITGVDDSQSAyaRGGGLDLVEKKLSAEARSFRVpvPFEFNA-AAMS 358
                      ******************************************************999899999***************99722578888.7778 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        +++ e+Lrv+pgEal Vn+ ++lh+++desvs+e++rd++L+l+kslsP+vv+vveqe+++n+++Fl+rfle+l+yy+a+f+s+++ lpr++
  AHYPO_017310-RA 359 GCQVNEENLRVRPGEALFVNFPFMLHHMPDESVSTENHRDRLLRLIKSLSPRVVTVVEQESNTNTPPFLQRFLETLDYYTAMFESVDVALPRDD 452
                      9999****************************************************************************************** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++ri+ E ++l+r+ivn+vace +er+erhe ++kWr+rl++aGF+++pls ++ +++k l++ ++++ yr+ e++g+l+lgWk+r L s+SaW
  AHYPO_017310-RA 453 KKRINTEMHCLARDIVNMVACEDSERVERHELFGKWRARLSMAGFTQLPLSFSVKESVKGLMKDFHEN-YRLAERDGTLYLGWKTRDLSSASAW 545
                      ******************************************************************55.************************* PP

             GRAS 374 r 374
                      r
  AHYPO_017310-RA 546 R 546
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.221148527IPR005202Transcription factor GRAS
PfamPF035142.5E-125175546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQTSQRNCIP SAVHGFPYQH APEMTPYCSS HYQIVDKNMY PDIPPQESLM SFQTYDEGYF  60
TLDSAPATSL YNIYDSPSDV STLSNRSPFS PQGSQSYISD PHQSSDNNYG SPISGSSVVD  120
DNTELRNRLR DLDRFLMEPD SPQMSDGHFC SMNSHGYHVA TSNRLMEMLP KMELQEVLYL  180
CAQAISDNDL SSAETLMNAL ENMVSINGTP IQRLGAYMLE GLRARIKSSG YTIYKKLRCD  240
QPTSKELLTY MHTLYQVCPY FKFAYVSSNS IIQEAIGNDR SIHIIDFQIG MGTQWTSLLH  300
SLANRPGGPP LVRITGVDDS QSAYARGGGL DLVEKKLSAE ARSFRVPVPF EFNAAAMSGC  360
QVNEENLRVR PGEALFVNFP FMLHHMPDES VSTENHRDRL LRLIKSLSPR VVTVVEQESN  420
TNTPPFLQRF LETLDYYTAM FESVDVALPR DDKKRINTEM HCLARDIVNM VACEDSERVE  480
RHELFGKWRA RLSMAGFTQL PLSFSVKESV KGLMKDFHEN YRLAERDGTL YLGWKTRDLS  540
SASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-5618154525377Protein SCARECROW
5b3h_D8e-5618154525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021719817.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0K9RLD00.0A0A0K9RLD0_SPIOL; Uncharacterized protein
TrEMBLA0A0R4ZQ820.0A0A0R4ZQ82_9CARY; SCL13
STRINGXP_010686653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13