PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017196-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family LSD
Protein Properties Length: 133aa    MW: 13949.3 Da    PI: 8.0709
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017196-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.88.4e-14832125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C+gCr+lL YP+GA+sV+Ca+C++V
  AHYPO_017196-RA  8 CSGCRNLLLYPAGATSVCCAVCNAV 32
                     ************************9 PP
2zf-LSD144.32.9e-144771125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     C gC+tlL+Y rGA+sV+C++C+t+
  AHYPO_017196-RA 47 CAGCHTLLMYIRGATSVQCSCCHTI 71
                     ***********************97 PP
3zf-LSD142.11.5e-1385109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Cr lL+Y +GA+sV+Ca+C++V
  AHYPO_017196-RA  85 CGNCRMLLMYQYGARSVKCAVCNFV 109
                      ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.7E-13535IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-11832IPR005735Zinc finger, LSD1-type
SuperFamilySSF486957.64E-522106IPR011031Multihaem cytochrome
TIGRFAMsTIGR010534.8E-144473IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-124771IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-1182111IPR005735Zinc finger, LSD1-type
PfamPF069438.8E-1385109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
GTQSQLVCSG CRNLLLYPAG ATSVCCAVCN AVTAVPPPGT EMAQLVCAGC HTLLMYIRGA  60
TSVQCSCCHT INLALEANQV AHVSCGNCRM LLMYQYGARS VKCAVCNFVT SIGVNLYNFQ  120
SLDFKGNQIK GN*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053598.12e-74PREDICTED: protein LOL1
RefseqXP_010053599.12e-74PREDICTED: protein LOL1
RefseqXP_010677260.12e-74PREDICTED: protein LOL1
SwissprotQ0J7V92e-71LSD1_ORYSJ; Protein LSD1
SwissprotQ93ZB11e-71LOL1_ARATH; Protein LOL1
TrEMBLA0A0E3TFF53e-74A0A0E3TFF5_FAGTA; LOL1
STRINGPGSC0003DMT4000451432e-74(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-60lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]