PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017119-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 451aa    MW: 50985.6 Da    PI: 7.5579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017119-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.3e-152368449
                     -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     e +s r vtf+k r  ++KKA+EL +LC+ae a+i+fs+  k y +
  AHYPO_017119-RA 23 EKESSRLVTFTKHRVSLFKKASELTTLCGAELAIIVFSPGRKAYSF 68
                     67899**********************************9888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.3241272IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-181271IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-221386IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-121434IPR002100Transcription factor, MADS-box
PfamPF003192.2E-182368IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-123449IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-124970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MENNQKSVKK PRGRQKIPMV CTEKESSRLV TFTKHRVSLF KKASELTTLC GAELAIIVFS  60
PGRKAYSFGY PSVYSVLDRY QNDTSFFNYL KDYQIGQASD PIQDEEGGNI KELIQNLTIL  120
ETQYETEKKR SEEINNRMQT HEEICKWTAM VENTKTLGEL HKIKDALTHL NTILHQRYHV  180
IELNANNGDV AGYRYPPNLL ENQNSFPYNY LGDQPQIKLA MVPPDSVMHP NNFDPYRMRM  240
AQAPPLKGAF GYPSSMSSID RANTIAMNLL NADTEATLNY VSSFLEPMAQ PGYPNNPNSM  300
LPFPRGSNLT GDLQCKGNFS FNSMNPLTIN PMWSNFQAST SISIGTNRIP TMPDLLGGSN  360
ELLSQPALPP QPRDMLNMPT LSSRPHRIDA LAPPLIFRVG SNLEVAVMVM MGLYFGIRLI  420
MMGIQMEMRM MILECFTSFF MATLNLERQW *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-30AGAMOUS-like 62