PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_017035-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 37622 Da PI: 4.6684 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 110 | 158 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 s+y+GVr++k +g+W+AeIrdp kr++lg+f taeeA a++ r+++ AHYPO_017035-RA 110 SKYRGVRQRK-WGKWAAEIRDP-----IlcKRVWLGTFNTAEEASTAYELKRNEY 158 89*******9.**********8.....445***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-16 | 110 | 159 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.10E-22 | 110 | 151 | No hit | No description |
Pfam | PF00847 | 1.4E-11 | 110 | 158 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-16 | 111 | 160 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.676 | 111 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-21 | 111 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MLDLQNPLLT QNSFYNKTKS TKPLRKVRVI CHDPDLTDSS SDEEIVSKRK RVSGSKKQFI 60 KEINLPSNVL NNYQLVALTE SSCHSNNGSK NPEKKRRVLG KPNTKKPSSS KYRGVRQRKW 120 GKWAAEIRDP ILCKRVWLGT FNTAEEASTA YELKRNEYQS VLAEKSQNAS CSVATTLSAC 180 HQSQNPTISE ELESVVSLNS PASVLEMDTS VSQMKPCTDD EEKKQPNESL IRVEEDNLAI 240 MNSIEEEFQL SELLHGLDFK EELDSSLNLG DLEMFTAMDA LDDVFQIGGF ECQDTTSVLP 300 EFTFDFDLDN LGNEWNDEVA GWIDETHHVA ACCP* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010681556.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_010681557.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor ERF118 | ||||
TrEMBL | A0A0K9QMF1 | 4e-88 | A0A0K9QMF1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681556.1 | 1e-111 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_017035-RA |