PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017005-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 253aa MW: 28347.9 Da PI: 6.5153 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71 | 1.8e-22 | 15 | 58 | 1 | 44 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 kprl+WtpeLH++Fv+av+qLGG+e+AtPk ++++m+++gLtl+ AHYPO_017005-RA 15 KPRLKWTPELHQQFVDAVNQLGGPERATPKGLMRVMGIPGLTLN 58 79****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 13 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.85E-9 | 14 | 57 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-14 | 15 | 57 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 5.6E-22 | 60 | 106 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MISQDMNLVL STDAKPRLKW TPELHQQFVD AVNQLGGPER ATPKGLMRVM GIPGLTLNAR 60 ISQAIEIQME VQRKLHEQIE VQRHLQLRIE AQGKYLQKVL KKAHETISNY NCSETGLEHA 120 KAELSQLVSM VNSSSFSGLT DATDLSCTMR YTGCSNESSL TSSESSGRRD EEFEKGSHEN 180 CMFIRPLLDD SRTQELGSRK RSRNTVYENN WVEQTGSKKS KFGLLETIDL NSQCGNDLDL 240 GSRQPIDLNS KE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-14 | 15 | 57 | 1 | 43 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-14 | 15 | 57 | 1 | 43 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-14 | 15 | 57 | 1 | 43 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-14 | 15 | 57 | 1 | 43 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-14 | 14 | 57 | 1 | 44 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021746851.1 | 1e-96 | myb family transcription factor PHL8-like isoform X2 | ||||
Swissprot | Q9SQQ9 | 7e-42 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A0K9RVJ2 | 4e-72 | A0A0K9RVJ2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683165.1 | 2e-72 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 2e-41 | myb-related protein 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017005-RA |
Publications ? help Back to Top | |||
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