PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016826-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family RAV
Protein Properties Length: 378aa    MW: 41736.9 Da    PI: 9.0887
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016826-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.4e-1272120155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      ++r++lg+f  ++eA +a++ a+++++g
  AHYPO_016826-RA  72 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAGRAYDVAARRFRG 120
                      89****9888.8*********3.....5**********99*************98 PP

2B399.12.7e-31201304198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+kv tpsdv+k++rlv+pk++ae++       +g+  +++ l +ede+ ++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F++++ 
  AHYPO_016826-RA 201 FEKVVTPSDVGKLNRLVIPKQHAEKYfpletssSGI--NGVLLNFEDENEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVAFQRSSA 292
                      99*************************998865333..7899************************************************8876 PP

                      .SEE..EEEEE- CS
               B3  88 .sefelvvkvfr 98 
                        +++l++  +r
  AHYPO_016826-RA 293 gLDKQLYIDYRR 304
                      677777777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.94E-2672127No hitNo description
SuperFamilySSF541711.31E-1672128IPR016177DNA-binding domain
PfamPF008471.4E-772120IPR001471AP2/ERF domain
PROSITE profilePS5103219.87573128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2073129IPR001471AP2/ERF domain
SMARTSM003801.5E-2873134IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.0E-39198303IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-28200293No hitNo description
SuperFamilySSF1019362.35E-31200293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.551201306IPR003340B3 DNA binding domain
SMARTSM010191.1E-24201306IPR003340B3 DNA binding domain
PfamPF023624.9E-29201305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDSASSMDTE SSSTTDSLLT NVRTSPPTAS ITKPSPSVTP VSGTLCRMGS GTSVIIDSET  60
GVETESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAGRA YDVAARRFRG  120
RDAVTNFKQL SIDQDDPDGI VELQFINSRS KSEIVDMLRK HTYLDELQQN KRNFKSNVDK  180
TTSYKSKQNN EIGGFCREDL FEKVVTPSDV GKLNRLVIPK QHAEKYFPLE TSSSGINGVL  240
LNFEDENEKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLK AGDVVAFQRS SAGLDKQLYI  300
DYRRRDCGNG SGSAGPVIRL FGVDICNVPI GISVNMAVEG GGNGNGNGCG NGKRFREVGL  360
MAPMESCRKK QLVVAAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5319831611127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754679.11e-170AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-134RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9QUD71e-163A0A0K9QUD7_SPIOL; Uncharacterized protein
STRINGXP_010681667.11e-159(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-137related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]