PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_016826-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | RAV | ||||||||
Protein Properties | Length: 378aa MW: 41736.9 Da PI: 9.0887 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 72 | 120 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eA +a++ a+++++g AHYPO_016826-RA 72 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAGRAYDVAARRFRG 120 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 99.1 | 2.7e-31 | 201 | 304 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+kv tpsdv+k++rlv+pk++ae++ +g+ +++ l +ede+ ++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F++++ AHYPO_016826-RA 201 FEKVVTPSDVGKLNRLVIPKQHAEKYfpletssSGI--NGVLLNFEDENEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVAFQRSSA 292 99*************************998865333..7899************************************************8876 PP .SEE..EEEEE- CS B3 88 .sefelvvkvfr 98 +++l++ +r AHYPO_016826-RA 293 gLDKQLYIDYRR 304 677777777666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.94E-26 | 72 | 127 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-16 | 72 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-7 | 72 | 120 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.875 | 73 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-20 | 73 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-28 | 73 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 8.0E-39 | 198 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.67E-28 | 200 | 293 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-31 | 200 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.551 | 201 | 306 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-24 | 201 | 306 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-29 | 201 | 305 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
MDSASSMDTE SSSTTDSLLT NVRTSPPTAS ITKPSPSVTP VSGTLCRMGS GTSVIIDSET 60 GVETESRKLP SSKYKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEDEAGRA YDVAARRFRG 120 RDAVTNFKQL SIDQDDPDGI VELQFINSRS KSEIVDMLRK HTYLDELQQN KRNFKSNVDK 180 TTSYKSKQNN EIGGFCREDL FEKVVTPSDV GKLNRLVIPK QHAEKYFPLE TSSSGINGVL 240 LNFEDENEKV WRFRYSYWNS SQSYVLTKGW SRFVKEKGLK AGDVVAFQRS SAGLDKQLYI 300 DYRRRDCGNG SGSAGPVIRL FGVDICNVPI GISVNMAVEG GGNGNGNGCG NGKRFREVGL 360 MAPMESCRKK QLVVAAM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-53 | 198 | 316 | 11 | 127 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021754679.1 | 1e-170 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
Swissprot | Q9ZWM9 | 1e-134 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A0K9QUD7 | 1e-163 | A0A0K9QUD7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010681667.1 | 1e-159 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-137 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_016826-RA |
Publications ? help Back to Top | |||
---|---|---|---|
|