PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016636-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 416aa    MW: 44574.1 Da    PI: 8.558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016636-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-11427226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k e Cr+f+r G C+yGd+CkF H+
  AHYPO_016636-RA  4 KKEACRNFQR-GNCRYGDKCKFLHV 27
                     789*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.14229IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6326IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPLKKEACRN FQRGNCRYGD KCKFLHVTQQ QPKSNNPFGF GSQNAAPFQQ QKPNPFGFGV  60
QNSGPTNGAP NSGGFKPFEN KWTRSEQQQN QSQAANHTCT DPDSCKRLFA EDFQNERPLW  120
KLTCYGHYKY LLCDITGDVS YEELRALAYD DAKRGISLQS IVERERNLVN SKAAEFENLL  180
RNPYTKHTTT QSNQNPFPIG AASSPSIAPQ NSGVSSFQQS PPPNMSFGVR PCAPPNSGFG  240
QFQSHPGPFG ASSNPPGSFG TQIPAQGGGN SNIFGFGNHG MNSQATQFPA QTGGNPFTPT  300
PGGFGNIGMI NQSAQVPGQN VGISFTSNIG GFGNTSMNTQ GSQLPSTSSV SPVTQTPPAN  360
NSSMLLNGLG GANGIQQPLN NNLQETSSID ASIWLKAEWT RGEIPEQPPP AAYVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669635.10.0PREDICTED: zinc finger CCCH domain-containing protein 16
SwissprotQ9FWS32e-76C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A0K9RP591e-166A0A0K9RP59_SPIOL; Uncharacterized protein
STRINGXP_010669635.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-74C3H family protein