PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_016574-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 500aa MW: 55469.6 Da PI: 6.967 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.9e-13 | 353 | 400 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 r+h +Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq AHYPO_016574-RA 353 RSHVLAERQRREKLNQRFYALRAVVPNiS------KMDKASLLLDAISYINDLQ 400 6899***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.6E-46 | 48 | 227 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.098 | 350 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-18 | 352 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.30E-14 | 353 | 404 | No hit | No description |
Pfam | PF00010 | 1.5E-10 | 353 | 400 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-19 | 354 | 419 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-15 | 356 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MGHNHMLTEE EKGLVEAVVG KDAYNFLMST ASDDSLSEFN PPGDILNLQN GLCQIVDGSS 60 WNYAIFWQIA SSKNGRAVLI WGDGHCRDPR TMVLDGGNGK LGTSKDEAKK RVLEKLHACF 120 GGSEEDNFAS TLDKVSDIEM LYLTSMYYWF RLDSSLGPAK SFVSGRSIWV SDVRSCLDHY 180 QSRAHLAKSA MFQTVVFVPV KTGVLELGSV RTVMEEPTLV QMVKTVFGES HSTQDKVSSK 240 VFGRDLSLST SRPRSMNISF APKKEDDASF SAESGVGGSD MGAKRVYGSS SNGKHSEPSD 300 KKLFSEINFG GSNPDNDFPG LDEASEELLL HAAELRARKR PTRRPVIGRE EARSHVLAER 360 QRREKLNQRF YALRAVVPNI SKMDKASLLL DAISYINDLQ TKISKLEAEK EKANSKQDQF 420 PIPEIDFHTR KDDALVHVTF PLDVHPVSKV VRTLREHQHV ALEANISTTE DKMIHTFTIR 480 AQAGEAEKLK EKVEAALSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-25 | 347 | 410 | 1 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021770217.1 | 0.0 | transcription factor bHLH3-like | ||||
Swissprot | A0A3Q7H216 | 1e-164 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A0K9Q7E4 | 0.0 | A0A0K9Q7E4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679204.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 1e-140 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_016574-RA |
Publications ? help Back to Top | |||
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