PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016495-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 437aa    MW: 49948.5 Da    PI: 7.8132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016495-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00029390421740
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STC CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsK 40 
                      ++E rR ++iN+++++L++ +   +    + Kl+K
  AHYPO_016495-RA 390 KIEDRRQKNINHRIQKLQSEIEAtL---AKLKLEK 421
                      799****************998866...6677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.60.203.4E-43059No hitNo description
SuperFamilySSF578892.27E-1035120No hitNo description
Gene3DG3DSA:3.30.60.202.3E-4158191No hitNo description
SuperFamilySSF578891.64E-12165254No hitNo description
PROSITE profilePS500818.194205253IPR002219Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
Gene3DG3DSA:3.30.60.208.7E-5210248No hitNo description
PfamPF076491.0E-6219246IPR011424C1-like
PROSITE patternPS013590220295IPR019786Zinc finger, PHD-type, conserved site
PfamPF031071.2E-5260304IPR004146DC1
Gene3DG3DSA:3.30.60.204.7E-4276305No hitNo description
PROSITE patternPS013590277352IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF578895.23E-15285364No hitNo description
PROSITE profilePS500818.078311368IPR002219Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
Gene3DG3DSA:3.30.40.102.9E-4328364IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0035556Biological Processintracellular signal transduction
GO:0055114Biological Processoxidation-reduction process
GO:0047134Molecular Functionprotein-disulfide reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEAIKRCDYK NHDLTSDGLE QAEGKEEDYI RCSRCDQQIV GEMYHCFSCS YYVHSDCMNL  60
EKTVVNHPLH SHAALNLSLV EFNSECNCYG CPKKFKDSFL GYKCNECPRK LDLKCTLMDP  120
NSINLHSHPL EFYYVNQQLQ ACNKKETMQV KVLIETVTGK NCAICELSLI GPINGCEPCD  180
FWIHKTCRNN FQQEIKWPHN LHRSDHRLSF LSAPPFLNRC GACGKVVLRN TFHCKECNFD  240
LHHGCAIRKP SLRHEIVGNI HNHDLIFFAD PAAFFRCYSC KGFSYKTSIF RCVECDFNLH  300
KACIKFPSTV KHKFHDCSLH FCDNFPIQNR VVCDKCGESV SPNSGAYTCS KCEFVVHLGC  360
VLLTPGASNQ EDEIKLVGKI VENEPLVGSK IEDRRQKNIN HRIQKLQSEI EATLAKLKLE  420
KKIVKEHGLI NGHFIK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-