PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016481-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 343aa MW: 39013.9 Da PI: 10.2628

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016481-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.3	6.5e-10	66	134	1	69
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 +fY++Y +GF++rks++k+++r++e +++ C+keg++e++k + ek +++ + + k ++k k AHYPO_016481-RA 66 EFYKRYVFAAGFNTRKSTTKRQRRSKELKSQYILCNKEGYKEKRKPTLEKDLINNEGESNEEKTSIKRK 134 6*******************************************9995555444444444444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-6	66	130	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.151	155	191	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.2E-5	165	186	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0022	166	193	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMRKNEELHS HSSTTTNAAT TPTIVVSPKV APLLTLGGTK EWLPICSNKL KPAIGMKFNN 60 LEEGLEFYKR YVFAAGFNTR KSTTKRQRRS KELKSQYILC NKEGYKEKRK PTLEKDLINN 120 EGESNEEKTS IKRKRLKENG LEVAKVSEGN RIRTFDVVFN PTNYDTTCSC KLFYRQGIPC 180 RHMIWVWKAK RWTTMALKKP IFDLGGNLLE QCANLIDKKK LLNDLWSEIH TCVSLAESND 240 EDLEAKRFAR NNETTGSANN KGQDIELLIG ASVPIEVIVK PPKISKNKGT RVYVSNVETS 300 KEKGAEIDVP NVETRGRSAK RLKGEKEKAT EQNQKKKRLC RGC

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMRKNEELHS HSSTTTNAAT TPTIVVSPKV APLLTLGGTK EWLPICSNKL KPAIGMKFNN  60
LEEGLEFYKR YVFAAGFNTR KSTTKRQRRS KELKSQYILC NKEGYKEKRK PTLEKDLINN  120
EGESNEEKTS IKRKRLKENG LEVAKVSEGN RIRTFDVVFN PTNYDTTCSC KLFYRQGIPC  180
RHMIWVWKAK RWTTMALKKP IFDLGGNLLE QCANLIDKKK LLNDLWSEIH TCVSLAESND  240
EDLEAKRFAR NNETTGSANN KGQDIELLIG ASVPIEVIVK PPKISKNKGT RVYVSNVETS  300
KEKGAEIDVP NVETRGRSAK RLKGEKEKAT EQNQKKKRLC RGC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021731266.1	1e-129	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010670286.1	2e-70	(Beta vulgaris)
STRING	XP_010694319.1	2e-70	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_016481-RA