PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_016315-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 452aa MW: 49155.5 Da PI: 6.1286 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.5e-06 | 340 | 378 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L AHYPO_016315-RA 340 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 378 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.449 | 329 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 339 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.02E-7 | 339 | 383 | No hit | No description |
SMART | SM00353 | 0.0037 | 340 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-9 | 343 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MAEEYCGATN WWDSTPSNRS RFDGGGSGGG GGGGSSTTSS TTTLTNSGGG PGFGWLTDGS 60 TPVDTKMDST SLQLVGLGLS SQAMAEWNQE PTALLSMLQE GMGLNTNFQQ DATGGGLMFG 120 SNNNNNNNNN NNNNNNNNNN SSQISQRREK LFEGNEDLSP EFKQMGRGFS LDSQQPQFSP 180 SGSSIESTIT CQGLAPPSGF QHDSSSTSSV FGSPSSILQG LMGCPDQQHQ QQQQQVNSNF 240 QHNYFGNEQH HHQAQLSPSW AKVPQFLRAT SPKQQQQQQQ EQHHLQFINN AAYWSGSASL 300 METTMELRDT NSMVKKSNSE NNTKRTRNDG ASSTLPPFKV RKEKMGDRIT ALQQLVSPFG 360 KTDTASVLSE AIEYIKFLHE QVSVLSSPYL KSGGSYQQHQ QSNEKAKMDP DSPKQDLRSR 420 GLCLVPVSST FPVTHETTVD FWTPTFGGTF R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021725985.1 | 0.0 | transcription factor bHLH123-like isoform X2 | ||||
TrEMBL | A0A0K9RS62 | 0.0 | A0A0K9RS62_SPIOL; Uncharacterized protein | ||||
STRING | XP_010694302.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 4e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_016315-RA |