PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_016222-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 583aa MW: 65173.5 Da PI: 6.5616

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_016222-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	426.1	2.8e-130	212	581	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL+ecA+a+s++ + ++l+++ ++ +s +g+p+qRl ay+ e+L ar +s++++y+al+++e +e l+++++++e++P+lkf+ AHYPO_016222-RA 212 LKKLLIECARALSENRFDDFERLVEQARKEVSISGEPIQRLGAYMIEGLVARKESSGNNIYRALKCKEPL---GKELLSYMHILYEICPYLKFG 302 5799***************************************************************8...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 +++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + +le++g+rLa + e+ ++p+ef++ v l AHYPO_016222-RA 303 YMAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALATRPGGAPYVRITGIDDPVSQyaRGASLEAVGKRLAALSEKHNIPVEFHA-VPVFL 395 ****************************************************9999999**********************.7999 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 d++ e+L+v+pgEa+aVn+ lqlh+++desv+++++rd +L++vksl+Pkv +++eqe+++n+++Fl+rf+eal+yysa+f+s+++++pr+ + AHYPO_016222-RA 396 PDVTKEMLDVRPGEAVAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLRPKVTTLIEQESNTNTTPFLTRFIEALSYYSAMFESIDVTMPRDRK 489 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eri+vE+++l+++ivnv+aceg er+erhe l+kW++r+++aGF+++pls+++++ ++ llr ++ + y++ e++g ++lgWkdr Lvs+SaW AHYPO_016222-RA 490 ERISVEQHCLAKDIVNVIACEGLERVERHELLGKWKSRFTMAGFQQYPLSSYVNSVIRELLRCYS-EHYTLVEKDGGMLLGWKDRMLVSASAW 581 *********************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.501	186	563	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.7E-128	212	581	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MDSHKIFGYN VIGADSSYMS SQYSSPQVPS RLFGSLKFNF KDSPISPFSS PFECDTATTL 60 SDSREHHSSS ESLSGKSPSC NSPLETNSYY QRLNSSPSED SQSSTVLPTT RGILFPQNSD 120 HETNMRYALQ ELETVLMGDE SVGGGSRQHH FPSERLASWN RSSQGSHGAQ LQSPSPSGER 180 ISDDNGGRQS EKRRKAAMKE EIPELKSPSG DLKKLLIECA RALSENRFDD FERLVEQARK 240 EVSISGEPIQ RLGAYMIEGL VARKESSGNN IYRALKCKEP LGKELLSYMH ILYEICPYLK 300 FGYMAANGAI AEACRNEDRI HIIDFQIAQG TQWLTLLQAL ATRPGGAPYV RITGIDDPVS 360 QYARGASLEA VGKRLAALSE KHNIPVEFHA VPVFLPDVTK EMLDVRPGEA VAVNFPLQLH 420 HTPDESVDVN NPRDGLLRMV KSLRPKVTTL IEQESNTNTT PFLTRFIEAL SYYSAMFESI 480 DVTMPRDRKE RISVEQHCLA KDIVNVIACE GLERVERHEL LGKWKSRFTM AGFQQYPLSS 540 YVNSVIRELL RCYSEHYTLV EKDGGMLLGW KDRMLVSASA WH*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MDSHKIFGYN VIGADSSYMS SQYSSPQVPS RLFGSLKFNF KDSPISPFSS PFECDTATTL  60
SDSREHHSSS ESLSGKSPSC NSPLETNSYY QRLNSSPSED SQSSTVLPTT RGILFPQNSD  120
HETNMRYALQ ELETVLMGDE SVGGGSRQHH FPSERLASWN RSSQGSHGAQ LQSPSPSGER  180
ISDDNGGRQS EKRRKAAMKE EIPELKSPSG DLKKLLIECA RALSENRFDD FERLVEQARK  240
EVSISGEPIQ RLGAYMIEGL VARKESSGNN IYRALKCKEP LGKELLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRNEDRI HIIDFQIAQG TQWLTLLQAL ATRPGGAPYV RITGIDDPVS  360
QYARGASLEA VGKRLAALSE KHNIPVEFHA VPVFLPDVTK EMLDVRPGEA VAVNFPLQLH  420
HTPDESVDVN NPRDGLLRMV KSLRPKVTTL IEQESNTNTT PFLTRFIEAL SYYSAMFESI  480
DVTMPRDRKE RISVEQHCLA KDIVNVIACE GLERVERHEL LGKWKSRFTM AGFQQYPLSS  540
YVNSVIRELL RCYSEHYTLV EKDGGMLLGW KDRMLVSASA WH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-61	218	581	25	378	Protein SCARECROW
5b3h_A	3e-61	218	581	24	377	Protein SCARECROW
5b3h_D	3e-61	218	581	24	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694285.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_019108087.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A0K9RKI5	0.0	A0A0K9RKI5_SPIOL; Uncharacterized protein
STRING	XP_010694285.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-163	scarecrow-like 5

Link Out ? help Back to Top
Phytozome	AHYPO_016222-RA

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]