PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016181-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 292aa    MW: 32097.3 Da    PI: 6.2682
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016181-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.6e-2185137259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++p      +s+gCp++k+vers+ dp++++itY  eHnh+
  AHYPO_016181-RA  85 SDSWAWRKYGQKPIKGSPYPS-----SSKGCPARKQVERSRLDPSMLIITYACEHNHS 137
                      69****************997.....599****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-2376139IPR003657WRKY domain
SuperFamilySSF1182901.28E-1879139IPR003657WRKY domain
PROSITE profilePS5081124.59379139IPR003657WRKY domain
SMARTSM007747.7E-2584138IPR003657WRKY domain
PfamPF031062.4E-1686136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVMQNKHHKS RVSSYLTNEQ DDPQSSSENA LDSPFSGDET RTTTTATATA PSPKKSRRGV  60
QKRVISVPIG DGDGSRNKSE AYPPSDSWAW RKYGQKPIKG SPYPSSSKGC PARKQVERSR  120
LDPSMLIITY ACEHNHSIPT TKHHYHHHHN NHHQSPSPTT TPPPTTPPTS TTQPTSVDDD  180
GNDDPSPSPS PSSPLHVNPF GDPPKLEFVG DTLTLGNLGV EYNWISDLSF DTPALVEPKL  240
EDFELATFSM KEEDESLFGD LDELPECSLV FRRDHGKIER CRNTAPICGS T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-13851391574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689722.11e-136PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBLA0A0J8BLH31e-134A0A0J8BLH3_BETVU; Uncharacterized protein
STRINGXP_010689722.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.18e-53WRKY DNA-binding protein 69