PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015938-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 347aa    MW: 39894.7 Da    PI: 5.2782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015938-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0592115123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y+C+ Cg+ ++++ +Lk+H r  H
  AHYPO_015938-RA  92 YVCSVCGRKCKTNLDLKKHFRQlH 115
                      9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.0E-571108IPR029060PIN domain-like
SMARTSM003550.003192115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.32392120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061677.63E-11104247No hitNo description
Gene3DG3DSA:3.40.50.10101.0E-5177232IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVQINEGIFV PKQTKVVVLW DLDNKPPRGP PYEAAIALKS LASRFGDVVD YSAYANRHAF  60
SHLPTWVLEE RRERRHLDVL ERTGKVTPSQ AYVCSVCGRK CKTNLDLKKH FRQLHERERQ  120
KKLSRMKQLK GKKRQRFKER YLDKNYKFEE AARTLITPKV GYGLARDLRR AGVYVKTVED  180
KPQAADWALK RQMMHSMSRG IDWLFLVSDD SDFRDMLRRA REEASLGTVV VGDRNGVLGR  240
NADLWVSWSG VENGKVSEKD LVPNRVNVGD WGDDSLERQD GLFSISEFDE GFEGESDLDH  300
IVNEVVLPSE ESNVETGRFS AFSEGEEDDE WLDDDDCEDE FEEKDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765992.10.0uncharacterized protein LOC110730499
TrEMBLA0A0K9RK001e-180A0A0K9RK00_SPIOL; Uncharacterized protein
STRINGXP_010686395.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-146C2H2-like zinc finger protein