PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_015908-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 19029.9 Da PI: 9.4286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 40 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H +H AHYPO_015908-RA 40 YECKTCNRQFSSFQALGGHRASH 62 99**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.32E-9 | 38 | 115 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 39 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 40 | 67 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.871 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.64 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.8E-9 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MGIKRNREDF QLERTVAMAN YLILLSRPEN PALVGPTRVY ECKTCNRQFS SFQALGGHRA 60 SHKKPRTLMG DHDHMMEDNR MDENASSRKS KLHACSICGL EFSIGQALGG HMRRHRAALT 120 GSSLLPNVSS VKKIKMDHND NKSRFVCLDL NLTPLENGLL EIGQLTPVVC * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021861960.1 | 8e-68 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0K9S341 | 2e-66 | A0A0K9S341_SPIOL; Uncharacterized protein | ||||
STRING | XP_010669838.1 | 3e-63 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-34 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_015908-RA |