PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015842-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 321aa    MW: 36067.7 Da    PI: 6.8006
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015842-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.5e-32201256156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k r++W+peLH+rFvea+e+LGGs++AtPk+i++lm+v+gLt+++vkSHLQkYRl+
  AHYPO_015842-RA 201 KRRRCWSPELHQRFVEALEKLGGSQVATPKQIRDLMQVDGLTNDEVKSHLQKYRLH 256
                      689***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.73E-18198259IPR009057Homeodomain-like
PROSITE profilePS5129416.098198258IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-29199260IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26201256IPR006447Myb domain, plants
PfamPF002498.4E-9203254IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDSNFPFLSL DLSPPFPTNP SSFPELLTRF LIVEITNSGE LSKLNTLIIG LEGELNKIQA  60
FQRELPLSFL ILHDALTKLK QVVKKSEDKQ CGSNYEKTSR VNLEIDEFEK KTWMSSAQLW  120
SPTSEDDDYE PPRKKDMGAI LSFSPITGDD IPRLSLMPSG LHEPGSEKLR TGGLLTGSGF  180
SSEVNRKVKP DIHFLNQTAR KRRRCWSPEL HQRFVEALEK LGGSQVATPK QIRDLMQVDG  240
LTNDEVKSHL QKYRLHVRKI PTNGGMGPRL STDDDQQHSS SPDGPFHLGR SKKCNSSSVL  300
EEEEDQEKSD GQSWKAQKHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-15201254154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-15201254154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-15201254154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-15201254154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-15201254255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680444.11e-115PREDICTED: myb family transcription factor EFM
TrEMBLA0A0K9R7611e-107A0A0K9R761_SPIOL; Uncharacterized protein
STRINGXP_010680444.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-41G2-like family protein