PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_015632-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 45223.8 Da PI: 8.5275 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.9e-32 | 228 | 281 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ AHYPO_015632-RA 228 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 281 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 225 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 226 | 281 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 228 | 281 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-7 | 229 | 280 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNPK PTSTVSSNPD LDHLTYWKNR VSDNSRNGYL KPGFESTTSP 60 SSTAAIDLSL SNPIAAAAAS AATGFHHHYH QQQQQLCQQL LQHHQHQHPN SGAGAGMSLV 120 GPDMGFSMPI RGIPVYQNPP PSFPFASPGL AQSLDSLGVS VGSVPSAGLA NGSIGSTTAN 180 HNHNHNHNHH HHHIAYQSPS NHHHHHHQGL MRSRFISRFP AKRSMRAPRM RWTSTLHARF 240 VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTDRAAA SSGQGDGYEN 300 GSSGDTSDDM FGNMQSSRSS ERPTLQHNRS SSNLLQDKDY SHGLWSNSSS REAWLHSKPK 360 DSSGNNLHCQ SSLEKEVDPK CLSYERVSEV SSSGENQTSP TKPNLEFTLG RPH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-16 | 229 | 283 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-16 | 229 | 283 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-16 | 229 | 283 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-16 | 229 | 283 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-16 | 229 | 283 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021768262.1 | 1e-168 | probable transcription factor KAN2 | ||||
Swissprot | Q9C616 | 2e-76 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | A0A0K9RFX7 | 1e-140 | A0A0K9RFX7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010677368.1 | 1e-163 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32240.1 | 1e-73 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_015632-RA |
Publications ? help Back to Top | |||
---|---|---|---|
|