PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015437-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Protein Properties

Length: 458aa MW: 51185.5 Da PI: 6.6546

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015437-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.3	1.6e-14	98	183	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v+ +l lp kf+++h + +++++l de g++++ ++ ++++ l++GW++F ++L +gD +vF+l+ ++f+ AHYPO_015437-RA 98 FIKFMLKSHVSGGFWLGLPSKFCDNHLPI--HDTKMVLVDEAGQEFDTTY--LAGKRG--LSAGWRGFSIHQNLLAGDALVFHLIAPTKFKA 183 89*******************999533..4568***********..666666..9********************998777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.1E-16	91	183	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-19	92	182	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.75E-20	96	182	No hit	No description
Pfam	PF02362	2.1E-12	98	185	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-12	98	184	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.941	98	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MQKKEKSAMS KKELKLSLVA HRLAMLQDHH YQPFPVSSTK IPDHCESDKR AMVLTDDGSL 60 EDTNDPIACI QTGDLGRSSS MKQAEKVKAN LSAKYPSFIK FMLKSHVSGG FWLGLPSKFC 120 DNHLPIHDTK MVLVDEAGQE FDTTYLAGKR GLSAGWRGFS IHQNLLAGDA LVFHLIAPTK 180 FKASFSTAKL YMHTSIYIIR EQNLGETDRA LGLANMDYSS LGKRKSEDST QKLILAEDST 240 QEVLRAEHST QKVLPAEDPH HSSSDNDLGS EVHDGIHFSD SAIAFEKVND FESFSIIVDG 300 LVIDSKFSDC YRKKYYELCS RQKCFLHENL LEGLNCNLVV GIISETINIA DGIKSCEARV 360 SISSEDLCIW EKTLEGFECL GMKVGFLRAR AKHLLGRAVE SNEAEESRKL KESIIKRAFA 420 EETMKALDDK FTLLKEMMQK IDLELESKFK KLSGIPN*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MQKKEKSAMS KKELKLSLVA HRLAMLQDHH YQPFPVSSTK IPDHCESDKR AMVLTDDGSL  60
EDTNDPIACI QTGDLGRSSS MKQAEKVKAN LSAKYPSFIK FMLKSHVSGG FWLGLPSKFC  120
DNHLPIHDTK MVLVDEAGQE FDTTYLAGKR GLSAGWRGFS IHQNLLAGDA LVFHLIAPTK  180
FKASFSTAKL YMHTSIYIIR EQNLGETDRA LGLANMDYSS LGKRKSEDST QKLILAEDST  240
QEVLRAEHST QKVLPAEDPH HSSSDNDLGS EVHDGIHFSD SAIAFEKVND FESFSIIVDG  300
LVIDSKFSDC YRKKYYELCS RQKCFLHENL LEGLNCNLVV GIISETINIA DGIKSCEARV  360
SISSEDLCIW EKTLEGFECL GMKVGFLRAR AKHLLGRAVE SNEAEESRKL KESIIKRAFA  420
EETMKALDDK FTLLKEMMQK IDLELESKFK KLSGIPN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688082.1	1e-155	PREDICTED: B3 domain-containing protein Os01g0234100 isoform X3
TrEMBL	A0A0K9QSK2	1e-148	A0A0K9QSK2_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010688081.1	1e-155	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	8e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015437-RA