PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015243-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 376aa    MW: 42037.2 Da    PI: 9.8787
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015243-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-1254107155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  AHYPO_015243-RA  54 SIYRGVTRHRWTGRYEAHLWDkSSWNHnQNKK---GAYDDEEAAARAYDLAALKYWG 107
                      57*******************77776434455...99******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-854107IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1454116IPR016177DNA-binding domain
SMARTSM003805.0E-1855121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-1155115IPR001471AP2/ERF domain
PROSITE profilePS5103217.39855115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASTSSGDVN DVGDGRVTVK MTATIMKKVK RERGSTAKER ISKITPSTAG KRTSIYRGVT  60
RHRWTGRYEA HLWDKSSWNH NQNKKGAYDD EEAAARAYDL AALKYWGPGT LINFQVTDYS  120
RDLKEMQNVS REDYLASLRR KSNGFSRGIA KYRALSSGRW EPSLRRASAT EYLHGIHYGK  180
GEDILAEGYI KWWCLNKTSQ LEVGMHTNGD EVGTELKSLE REVQSTKTYQ LPKLGTSYEV  240
KRIKGSVTSA LSILTRSTAY KNMQEKASKS NETVYDDDEK ENKCKINMTD SGNTVQIGRL  300
GSALGIGGYP LHKNVFSLSQ LLTTPLLTNY NSIEPLADSI LWKPVLSVLP TTSRTSEVSK  360
TDTSSTYSFF RQEEG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0270512e-38KJ027051.1 UNVERIFIED: Atriplex canescens isolate AC622 Ac protein-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672391.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
RefseqXP_010672863.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-111AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0K9QD461e-176A0A0K9QD46_SPIOL; Uncharacterized protein
STRINGXP_010672391.10.0(Beta vulgaris)
STRINGXP_010672863.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-103AP2 family protein