PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015224-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 481aa MW: 53612 Da PI: 5.6214

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015224-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	424.5	8.7e-130	110	480	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+e+L++cA+a+s++d+ a +l+++l++++s +g+p+qRl ay++e+L arl++s+ ++y+al+++e + s e l++++l++ev+P++kf+ AHYPO_015224-RA 110 LKEALIACAKAISNDDFLTAAWLISELQNMVSVSGEPIQRLSAYMLEGLIARLSSSGISIYRALKCNEPT---SGELLSYMQLLYEVCPYFKFG 200 5789***************************************************************9...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN aI +a+++e+++HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++ +s + l+ ++erL+++A+++++pf+f++ ++ ++ AHYPO_015224-RA 201 YMSANGAIADALKNEDKIHIIDFQIAQGSQWVSLIQALAARPGGPPQVRITGLDDTTSAfaRGGGLNIVRERLSNLAKACNLPFQFHA-ATLTF 293 ***************************************************98889999*********************.78899 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 + +++L+++p+EalaVn+ + lh+++desv e++rd++L+lvks sPkvv+++e ++++n+++F rfle+l++ysa+f+s++++lp+e++ AHYPO_015224-RA 294 GAEVIQNLELRPDEALAVNFPFLLHHIPDESVGPENHRDSLLRLVKSWSPKVVTLIEYDLNTNTSPFYPRFLETLSFYSAIFESINVTLPKEHR 387 9999************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eri+vE+++l+reivn++acegaer+erhe +kWr+r+ +aGF p pls+ +++++++ll+k++ y +ee++g+l+lgW++r Lv+ +aWr AHYPO_015224-RA 388 ERINVEQHCLAREIVNIIACEGAERVERHELHGKWRSRFLMAGFMPHPLSSLVNATIRTLLQKYSTS-YGLEERDGALYLGWMNRVLVTSCAWR 480 *************************************************************55.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.013	84	461	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-127	110	480	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MQNSKKLKGI YCTFESSFLT GADNLYRSPS TGSLSGNGSS AVSVLDPESS IDSQEIVNLS 60 PANDLYSTHD TDNLRCRLRE LETAMMEPMS HTSDTENWQQ LVEMISRGEL KEALIACAKA 120 ISNDDFLTAA WLISELQNMV SVSGEPIQRL SAYMLEGLIA RLSSSGISIY RALKCNEPTS 180 GELLSYMQLL YEVCPYFKFG YMSANGAIAD ALKNEDKIHI IDFQIAQGSQ WVSLIQALAA 240 RPGGPPQVRI TGLDDTTSAF ARGGGLNIVR ERLSNLAKAC NLPFQFHAAT LTFGAEVIQN 300 LELRPDEALA VNFPFLLHHI PDESVGPENH RDSLLRLVKS WSPKVVTLIE YDLNTNTSPF 360 YPRFLETLSF YSAIFESINV TLPKEHRERI NVEQHCLARE IVNIIACEGA ERVERHELHG 420 KWRSRFLMAG FMPHPLSSLV NATIRTLLQK YSTSYGLEER DGALYLGWMN RVLVTSCAWR 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MQNSKKLKGI YCTFESSFLT GADNLYRSPS TGSLSGNGSS AVSVLDPESS IDSQEIVNLS  60
PANDLYSTHD TDNLRCRLRE LETAMMEPMS HTSDTENWQQ LVEMISRGEL KEALIACAKA  120
ISNDDFLTAA WLISELQNMV SVSGEPIQRL SAYMLEGLIA RLSSSGISIY RALKCNEPTS  180
GELLSYMQLL YEVCPYFKFG YMSANGAIAD ALKNEDKIHI IDFQIAQGSQ WVSLIQALAA  240
RPGGPPQVRI TGLDDTTSAF ARGGGLNIVR ERLSNLAKAC NLPFQFHAAT LTFGAEVIQN  300
LELRPDEALA VNFPFLLHHI PDESVGPENH RDSLLRLVKS WSPKVVTLIE YDLNTNTSPF  360
YPRFLETLSF YSAIFESINV TLPKEHRERI NVEQHCLARE IVNIIACEGA ERVERHELHG  420
KWRSRFLMAG FMPHPLSSLV NATIRTLLQK YSTSYGLEER DGALYLGWMN RVLVTSCAWR  480
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-60	117	479	26	378	Protein SCARECROW
5b3h_A	9e-61	117	479	25	377	Protein SCARECROW
5b3h_D	9e-61	117	479	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675879.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_010675880.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A0K9RZE7	0.0	A0A0K9RZE7_SPIOL; Uncharacterized protein
STRING	XP_010675879.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015224-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]