PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015165-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 735aa    MW: 80047.5 Da    PI: 6.1727
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015165-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.47.8e-161769351
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNr
  AHYPO_015165-RA 17 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNR 69
                     5679************************************************9 PP
2START177.76.7e-561153232205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l
  AHYPO_015165-RA 115 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIEL 207
                      7899******************************************************.8888888888****************9999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+
  AHYPO_015165-RA 208 LYMQLYAPTTLAPaRDFWLLRYTSIMEDGSLVVCERSINNTQNGPSmpsVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 301
                      *********************************************9888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s ++ ++kt++a+l+++++
  AHYPO_015165-RA 302 LYESPTVVAQKTTMAALRQLRQ 323
                      ******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.8921269IPR001356Homeobox domain
SMARTSM003891.2E-91480IPR001356Homeobox domain
SuperFamilySSF466897.27E-131669IPR009057Homeodomain-like
CDDcd000861.43E-131769No hitNo description
PfamPF000462.0E-131869IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-152069IPR009057Homeodomain-like
PROSITE profilePS5084825.976105333IPR002913START domain
CDDcd088752.68E-79109325No hitNo description
Gene3DG3DSA:3.30.530.201.7E-22114320IPR023393START-like domain
SuperFamilySSF559612.33E-38114326No hitNo description
SMARTSM002345.3E-39114324IPR002913START domain
PfamPF018522.9E-53115323IPR002913START domain
PfamPF086701.8E-17648721IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MMSMSCKDGK GGMDNGKYVR YTPEQVEALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK  60
QIKVWFQNRS FFIWWLQSGI ASKDTSCESV VTSGQHHLTP QHPPRDASPA GLLSIAEETL  120
AEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLE PTRVAEILKD  180
RPSWFRDCRA VDVLNVLPTA NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SIMEDGSLVV  240
CERSINNTQN GPSMPSVQNF VRAEMLPSGY LIRPCEGGGS IIHIVDHMDL EPWSVPEVLR  300
PLYESPTVVA QKTTMAALRQ LRQIAQEVSQ PNVSNWGRRP AALQALSQKL SRGFNEALNG  360
FTDEGWSMSG NDGVDDVTIL VNSSPDKLMA LNLAYANGFS SVSNTVLCAR ASMLLQNVPP  420
AVLLRFLREH RSEWADNNID AYLAAAAKIS PCSLPGSRMG GFGNQVILPL AHTIEHEELL  480
EVIKLEGVVS CPEDAMMPRD MFLLQLCSGM DENAVGTCSE LIFAPIDASF ADDAPLLPSG  540
FRIIPLDSVK ESSSPNRTLD LASALEVGPS ANRSSSDNSA SGNNMRSVMT IAFQFAFESH  600
LQENVASMAR QYVRSIISSV QRVALALSPH LGSQAGLRSP LGNPEAHTLA RWIVQSYRCF  660
LGVELLKSTG EGSDAILKSL WHHSDAIMCC SLKALPVFTF ANQAGFCMPS RRHLSFKHGP  720
SSFIREGSGV ESAE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691423.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9RV390.0A0A0K9RV39_SPIOL; Uncharacterized protein
STRINGXP_010691422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]