PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015113-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ZF-HD
Protein Properties Length: 318aa    MW: 34331.8 Da    PI: 8.0448
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015113-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-3244101258
      ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                      ++v+YkeClkNhAa++Ggha+DGC+Efmp ++++  ++++l+CaACgCHRnFHRr+++
  AHYPO_015113-RA  44 QHVTYKECLKNHAATIGGHALDGCCEFMPGPTANpLNPTSLTCAACGCHRNFHRRDPD 101
                      679******************************999*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2646100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-284799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.2584899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-194898IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.36E-18167236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28169237IPR009057Homeodomain-like
TIGRFAMsTIGR015658.2E-27178234IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMDFITGPT TTVTTPPTPD SDTDTPPHPP PSKRAHHNLN SQHQHVTYKE CLKNHAATIG  60
GHALDGCCEF MPGPTANPLN PTSLTCAACG CHRNFHRRDP DDPTPLHHLI PPSTGARKAH  120
SPPSASHLLL SLSGHTHSPS APSDHEILQN NPTAGNGGPG PIIQSYYNNN NGSSSSSKKR  180
FRTKFSQEQK EKMHEFSEKI GWKLKKGEER LVEEFCKEIG VDRNVFKVWM HNNKHSSSTS  240
GSSSQRREKN GINCGTTTTT TDDIITITGA TTTTSNSNTN TNGHNHNHNL NVGLNNCGGL  300
LATALDFNFA NAETKAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211772411680ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842966.11e-117zinc-finger homeodomain protein 8-like
TrEMBLA0A0K9RTK11e-117A0A0K9RTK1_SPIOL; Uncharacterized protein
STRINGXP_010683186.15e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.18e-54homeobox protein 30