PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015098-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 348aa    MW: 39112.7 Da    PI: 6.4504
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015098-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.46.6e-332175155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     kprl+WtpeLH+rFv+av+qLGG+ekAtPk ++++m+++gLtl+h+kSHLQkYRl
  AHYPO_015098-RA 21 KPRLKWTPELHQRFVDAVNQLGGPEKATPKGLMRVMGIPGLTLYHLKSHLQKYRL 75
                     79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-311976IPR009057Homeodomain-like
SuperFamilySSF466891.74E-162077IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-232176IPR006447Myb domain, plants
PfamPF002492.3E-82374IPR001005SANT/Myb domain
PfamPF143793.7E-21126172IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGHLQNMQSQ DTNLVLSTDA KPRLKWTPEL HQRFVDAVNQ LGGPEKATPK GLMRVMGIPG  60
LTLYHLKSHL QKYRLGKNHQ HSETCSESRS EATNCKENPS IDVLNLFDEE KLTNDSTEDQ  120
FNENVRIAQA IKMQMEVQRK LHEQIEVQRH LQLRIEAQGQ YLQKVLKKAQ ETLSSYNCSA  180
AGVEHAKAEL SHLVSMVSSS SFSGITNATD LSLENLDQKH VMRYTGCSVE SSLTSSESSG  240
RREDEKETRV DNEETENGNH GDCVVILPLL DESRTRGMGS RKRSKNTISE NNWVEQTSCK  300
KSKQENGKEI GHGLRKFGLL ETIDLNSQCE NDLDLGPRQP IDLNSKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-212177157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746851.11e-174myb family transcription factor PHL8-like isoform X2
SwissprotQ9SQQ91e-72PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0K9RVJ21e-134A0A0K9RVJ2_SPIOL; Uncharacterized protein
STRINGXP_010683165.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.32e-67G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]