PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_015098-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 348aa MW: 39112.7 Da PI: 6.4504 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.6e-33 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG+ekAtPk ++++m+++gLtl+h+kSHLQkYRl AHYPO_015098-RA 21 KPRLKWTPELHQRFVDAVNQLGGPEKATPKGLMRVMGIPGLTLYHLKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-31 | 19 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.74E-16 | 20 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-23 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-8 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.7E-21 | 126 | 172 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGHLQNMQSQ DTNLVLSTDA KPRLKWTPEL HQRFVDAVNQ LGGPEKATPK GLMRVMGIPG 60 LTLYHLKSHL QKYRLGKNHQ HSETCSESRS EATNCKENPS IDVLNLFDEE KLTNDSTEDQ 120 FNENVRIAQA IKMQMEVQRK LHEQIEVQRH LQLRIEAQGQ YLQKVLKKAQ ETLSSYNCSA 180 AGVEHAKAEL SHLVSMVSSS SFSGITNATD LSLENLDQKH VMRYTGCSVE SSLTSSESSG 240 RREDEKETRV DNEETENGNH GDCVVILPLL DESRTRGMGS RKRSKNTISE NNWVEQTSCK 300 KSKQENGKEI GHGLRKFGLL ETIDLNSQCE NDLDLGPRQP IDLNSKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-21 | 21 | 77 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-21 | 21 | 77 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-21 | 21 | 77 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-21 | 21 | 77 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021746851.1 | 1e-174 | myb family transcription factor PHL8-like isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-72 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A0K9RVJ2 | 1e-134 | A0A0K9RVJ2_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683165.1 | 1e-145 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 2e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_015098-RA |
Publications ? help Back to Top | |||
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