PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015015-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 472aa MW: 52767.2 Da PI: 5.0251

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015015-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	418.4	6e-128	101	471	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l+e+L++cA+a+s++d+ a++l+ +l++++s +g+p+qRl ay++e+L arl++++ ++y+al+++e + s e l++++l++ev+P++kf+ AHYPO_015015-RA 101 LKEALIACAKAISNDDFLTAEWLIYELQNMVSVSGEPIQRLGAYMLEGLVARLSSTGISIYNALKCNEPT---SGELLSYMQLLYEVCPYFKFG 191 5789***************************************************************9...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ aN aI +a+++e+++HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++ +s+ + l ++erL+++A ++++pfef++ + ++ AHYPO_015015-RA 192 YMSANGAIADALKNEDKIHIIDFQIAQGSQWVSLIQALAARPGGPPQVRITGLDDTTSEfaRGGGLDIVRERLSNLAIACNLPFEFHA-AKLTF 284 ***************************************************99889999*********************.78899 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++L+++p+E+laVn+ + lh+++desv e++rd++L+l+ks sPkvv++ve ++++n+++F rfle+l++ysa+f+s++++lp++++ AHYPO_015015-RA 285 GPEVIRNLELRPDEVLAVNFPFLLHHIPDESVGPENHRDSLLRLIKSWSPKVVTLVEYDLNTNTSPFYPRFLETLSFYSAIFESINVTLPKDHK 378 9999************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ri+vE+++l+reivn++aceg er+erhe +kWr+r+ +aGF+p+pls +++++k+ll+k++ y +ee++g+l+lgW+dr Lv+ +aW+ AHYPO_015015-RA 379 DRINVEQHCLAREIVNIIACEGGERVERHELHGKWRSRFLMAGFRPYPLSPLVNATIKTLLQKYSTS-YGLEEKDGALYLGWMDRVLVTSCAWQ 471 *************************************************************55.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.356	75	452	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-125	101	471	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MQNPENLQGI YCTFESSFIT GVDNLCRSPL TGSIYGNGCS AVSLLDAKST SSDSQEIVIH 60 NIDNLRYQLK ELETVMMEPT SHNSENENWQ KLVGVISRGE LKEALIACAK AISNDDFLTA 120 EWLIYELQNM VSVSGEPIQR LGAYMLEGLV ARLSSTGISI YNALKCNEPT SGELLSYMQL 180 LYEVCPYFKF GYMSANGAIA DALKNEDKIH IIDFQIAQGS QWVSLIQALA ARPGGPPQVR 240 ITGLDDTTSE FARGGGLDIV RERLSNLAIA CNLPFEFHAA KLTFGPEVIR NLELRPDEVL 300 AVNFPFLLHH IPDESVGPEN HRDSLLRLIK SWSPKVVTLV EYDLNTNTSP FYPRFLETLS 360 FYSAIFESIN VTLPKDHKDR INVEQHCLAR EIVNIIACEG GERVERHELH GKWRSRFLMA 420 GFRPYPLSPL VNATIKTLLQ KYSTSYGLEE KDGALYLGWM DRVLVTSCAW Q*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MQNPENLQGI YCTFESSFIT GVDNLCRSPL TGSIYGNGCS AVSLLDAKST SSDSQEIVIH  60
NIDNLRYQLK ELETVMMEPT SHNSENENWQ KLVGVISRGE LKEALIACAK AISNDDFLTA  120
EWLIYELQNM VSVSGEPIQR LGAYMLEGLV ARLSSTGISI YNALKCNEPT SGELLSYMQL  180
LYEVCPYFKF GYMSANGAIA DALKNEDKIH IIDFQIAQGS QWVSLIQALA ARPGGPPQVR  240
ITGLDDTTSE FARGGGLDIV RERLSNLAIA CNLPFEFHAA KLTFGPEVIR NLELRPDEVL  300
AVNFPFLLHH IPDESVGPEN HRDSLLRLIK SWSPKVVTLV EYDLNTNTSP FYPRFLETLS  360
FYSAIFESIN VTLPKDHKDR INVEQHCLAR EIVNIIACEG GERVERHELH GKWRSRFLMA  420
GFRPYPLSPL VNATIKTLLQ KYSTSYGLEE KDGALYLGWM DRVLVTSCAW Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-60	108	470	26	378	Protein SCARECROW
5b3h_A	3e-60	108	470	25	377	Protein SCARECROW
5b3h_D	3e-60	108	470	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675879.1	0.0	PREDICTED: scarecrow-like protein 21
Refseq	XP_010675880.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A0K9RZE7	0.0	A0A0K9RZE7_SPIOL; Uncharacterized protein
STRING	XP_010675879.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015015-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]