PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_014996-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | TCP | ||||||||
Protein Properties | Length: 91aa MW: 9790.9 Da PI: 10.6147 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 79.2 | 1.1e-24 | 43 | 90 | 2 | 49 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktie 49 ag kdrhsk++T++g+RdRR Rlsa++a++f+d+qd+LG+d++sk+++ AHYPO_014996-RA 43 AGLKDRHSKVCTAKGPRDRRARLSAHTAIQFYDVQDRLGYDRPSKAVD 90 788*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-22 | 45 | 90 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.926 | 45 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MGIGDSSSQQ HKQQQSGSNR ASLRKSGIGE IVEVQGGQIV QAAGLKDRHS KVCTAKGPRD 60 RRARLSAHTA IQFYDVQDRL GYDRPSKAVD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-16 | 50 | 90 | 1 | 41 | Putative transcription factor PCF6 |
5zkt_B | 1e-16 | 50 | 90 | 1 | 41 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021851388.1 | 3e-39 | transcription factor TCP4-like | ||||
Refseq | XP_021851389.1 | 3e-39 | transcription factor TCP4-like | ||||
Refseq | XP_021851390.1 | 3e-39 | transcription factor TCP4-like | ||||
Refseq | XP_021851391.1 | 3e-39 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 8e-34 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A0K9RU33 | 6e-38 | A0A0K9RU33_SPIOL; Uncharacterized protein | ||||
STRING | Aquca_005_00099.1 | 1e-35 | (Aquilegia coerulea) | ||||
STRING | XP_007133163.1 | 9e-36 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-34 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_014996-RA |