PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014930-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-X1
Protein Properties Length: 789aa    MW: 87840.1 Da    PI: 8.4202
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014930-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.22.3e-05190208120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG H C  lCH+GpCp+Cp+
  AHYPO_014930-RA 190 CG-HYCLLLCHPGPCPSCPK 208
                      **.***************96 PP
2zf-NF-X121.55e-07242261120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+HkC  +CH G+C pC++
  AHYPO_014930-RA 242 CGIHKCVDICHNGECSPCRE 261
                      ******************85 PP
3zf-NF-X120.51e-06423448120
         zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                      CG      +HkC ++CH+GpC pCp+
  AHYPO_014930-RA 423 CGrklrcrNHKCASPCHRGPCAPCPL 448
                      777777779***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.16E-672151No hitNo description
PROSITE patternPS01359078144IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.53578145IPR001841Zinc finger, RING-type
CDDcd060088.62E-5178226No hitNo description
SMARTSM004380.037190208IPR000967Zinc finger, NF-X1-type
PfamPF014220.0021190207IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-7232280No hitNo description
SMARTSM004380.0024242261IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-5242260IPR000967Zinc finger, NF-X1-type
CDDcd060082.91E-7285332No hitNo description
SMARTSM004380.17295314IPR000967Zinc finger, NF-X1-type
PfamPF014220.99295313IPR000967Zinc finger, NF-X1-type
CDDcd060083.34E-8339388No hitNo description
SMARTSM004380.56349369IPR000967Zinc finger, NF-X1-type
PfamPF014220.0036349368IPR000967Zinc finger, NF-X1-type
CDDcd060085.09E-6392440No hitNo description
SMARTSM004380.0096402421IPR000967Zinc finger, NF-X1-type
PfamPF014220.0024402420IPR000967Zinc finger, NF-X1-type
CDDcd060089.86E-11419467No hitNo description
PfamPF014220.0011423447IPR000967Zinc finger, NF-X1-type
SMARTSM004385.9E-4429448IPR000967Zinc finger, NF-X1-type
SMARTSM00438130486507IPR000967Zinc finger, NF-X1-type
PfamPF0142221496505IPR000967Zinc finger, NF-X1-type
SMARTSM0043894515560IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1582600IPR000967Zinc finger, NF-X1-type
PfamPF014223.5582599IPR000967Zinc finger, NF-X1-type
SMARTSM0043813645666IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MSSTKNPPNS PSSDSSDYDS DPTTVSSAHH LRHVDLSNSI FKAYLEINGQ HSSPSHQSID  60
LSKIQSFLNS SSSGALSCLI CLERIKTTDP TWSCNGFCFS VFHLHCIQNW AQQSTALAAA  120
RALTRLPISA DAAADTSVWN CPKCRFEYSK SLIPKNYYCF CGKVENPSHD PWVLPHSCGE  180
ICGRPLKNNC GHYCLLLCHP GPCPSCPKLV KSSCFCGGIQ DVRRCGFKEF SCNKQCVKVL  240
DCGIHKCVDI CHNGECSPCR EKGVYRCQCG KVKEERECCD RNFRCDNPCG RGLECGKHVC  300
ERGCHGGVCG QCPSKGKRTC PCGKRSHEGI PCDVEVPLCG ATCDKNLSCG RHRCPERCHR  360
GSCVETCRNV ITKSCRCGSL KKQIPCYQEL VCERKCMRER DCGRHACRRR CCDGECPPCT  420
EVCGRKLRCR NHKCASPCHR GPCAPCPLMV TISCACGATR FEVPCGTETE QKPPRCRKQC  480
PIVPLCRHSL ISKPHKCHYG ACPPCGLPCG EEYPCGHVCK LRCHGPQPPP KPEFTLKPKK  540
KKQKYESEPT AGTPCPPCPE LVWRSCVGQH FAAERMERTP VCSHPCPLPC HPAECPPCKV  600
LLKRACHCGA MVHVFECLYY NTLSEKKQLS VRSCGGPCHR KLPNCTHLCP ETCHPGHCPS  660
PEKCSKKVTV RCKCHSLKKE WLCHDVQTAY RESGRESKDI PKSLFGIGLL PCDSNCKSKA  720
DAIESELLQR KQKPPEKLVS HLQRFFMIVI VLVVLVAVAY YGYKGLMLLN EWMNKVEERR  780
EKTRYKRI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769188.10.0NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0K9RJJ40.0A0A0K9RJJ4_SPIOL; Uncharacterized protein
STRINGXP_010689644.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors