PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014917-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 723aa MW: 82032.5 Da PI: 5.9839

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014917-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	370.8	1.8e-113	349	720	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a++lL+++++++sp gd +qRla+y++ +L+arla+++s++ykal++++t+ +++l+a+ l+ ++P+ k+s AHYPO_014917-RA 349 LRTLLITCAQAVATDDRRTANELLKQIRQHSSPLGDGNQRLAHYLADGLEARLAGMGSQIYKALTSQRTA---AADVLKAYLLYLAACPFRKLS 439 6789**********************************************************999999...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N+ I + + ++ ++HiiDf+i +G+QWp+++q + R++gpp+++iTg++ p++g +e++eetg+rL+++A+e+gvpfe+++ +akr+ AHYPO_014917-RA 440 NFFSNKSIAKRTRKAAKIHIIDFGILYGFQWPTFIQRQSMREGGPPRIKITGIDFPQPGfrPAERVEETGRRLENYAHEFGVPFEYRA-IAKRW 532 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 +++ +e+++++++E+++Vn++++l++++de+v++es r+ vLkl+++l+P+ +++ + ++++ F++rf eal ++sa fd le+ +pre + AHYPO_014917-RA 533 DTIVPEDFDIDEDEVVVVNCIYRLKNMPDETVCVESSRNIVLKLIRKLNPNFFIHGVVNGAYSAPFFVTRFREALFHFSAQFDVLETVVPREYD 626 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+ +Er ll+re+ nv+aceg er+er et+++W+ rl +aGF+++pl++++ + a + ++ + + ++ +e+s +l+lgW++r L+++S W+ AHYPO_014917-RA 627 ERMLIERDLLAREALNVIACEGWERVERPETYKQWKIRLIRAGFTQLPLDSEIKERALMQVHSAYHKDFMTDEDSRWLLLGWRGRVLFALSTWQ 720 *************************************************************888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.001	323	700	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.3E-111	349	720	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MDPRVQDYFG ITNGNMLQLV NDNVFPVHSN GNIYLNGLPN LRNGFMGHNS NTTSNSSSTS 60 RDVNGVNSIF PDDPSLTNVS SISSLSHEEN FLEDCDFSDS VLKFINQILV EEDVEGKECM 120 LQESLQHQAL QGAQISNFHP QLDSQPNLSY FSPNFNDRNS ILVDPNWVYE QENIYDLGFE 180 NPFPLYQPLL SSSCPSSVDY AMDGGLMGSH PAAFGVPETC HGFLPIRNYL FVSDDANGLP 240 EKLGVSQDLD EFRDGWRVRK NGFRVNLDTK EERSSKQAAI YEDSNVRSDM FDKVLLHHGG 300 DQNELVMSLR TTLRTATVNK TEISDQSKGS IGGKGRGRNR GGRKEMVDLR TLLITCAQAV 360 ATDDRRTANE LLKQIRQHSS PLGDGNQRLA HYLADGLEAR LAGMGSQIYK ALTSQRTAAA 420 DVLKAYLLYL AACPFRKLSN FFSNKSIAKR TRKAAKIHII DFGILYGFQW PTFIQRQSMR 480 EGGPPRIKIT GIDFPQPGFR PAERVEETGR RLENYAHEFG VPFEYRAIAK RWDTIVPEDF 540 DIDEDEVVVV NCIYRLKNMP DETVCVESSR NIVLKLIRKL NPNFFIHGVV NGAYSAPFFV 600 TRFREALFHF SAQFDVLETV VPREYDERML IERDLLAREA LNVIACEGWE RVERPETYKQ 660 WKIRLIRAGF TQLPLDSEIK ERALMQVHSA YHKDFMTDED SRWLLLGWRG RVLFALSTWQ 720 PA*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MDPRVQDYFG ITNGNMLQLV NDNVFPVHSN GNIYLNGLPN LRNGFMGHNS NTTSNSSSTS  60
RDVNGVNSIF PDDPSLTNVS SISSLSHEEN FLEDCDFSDS VLKFINQILV EEDVEGKECM  120
LQESLQHQAL QGAQISNFHP QLDSQPNLSY FSPNFNDRNS ILVDPNWVYE QENIYDLGFE  180
NPFPLYQPLL SSSCPSSVDY AMDGGLMGSH PAAFGVPETC HGFLPIRNYL FVSDDANGLP  240
EKLGVSQDLD EFRDGWRVRK NGFRVNLDTK EERSSKQAAI YEDSNVRSDM FDKVLLHHGG  300
DQNELVMSLR TTLRTATVNK TEISDQSKGS IGGKGRGRNR GGRKEMVDLR TLLITCAQAV  360
ATDDRRTANE LLKQIRQHSS PLGDGNQRLA HYLADGLEAR LAGMGSQIYK ALTSQRTAAA  420
DVLKAYLLYL AACPFRKLSN FFSNKSIAKR TRKAAKIHII DFGILYGFQW PTFIQRQSMR  480
EGGPPRIKIT GIDFPQPGFR PAERVEETGR RLENYAHEFG VPFEYRAIAK RWDTIVPEDF  540
DIDEDEVVVV NCIYRLKNMP DETVCVESSR NIVLKLIRKL NPNFFIHGVV NGAYSAPFFV  600
TRFREALFHF SAQFDVLETV VPREYDERML IERDLLAREA LNVIACEGWE RVERPETYKQ  660
WKIRLIRAGF TQLPLDSEIK ERALMQVHSA YHKDFMTDED SRWLLLGWRG RVLFALSTWQ  720
PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-47	356	721	26	380	Protein SCARECROW
5b3h_A	1e-47	356	721	25	379	Protein SCARECROW
5b3h_D	1e-47	356	721	25	379	Protein SCARECROW
5hyz_A	1e-47	353	720	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856937.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0K9QXM3	0.0	A0A0K9QXM3_SPIOL; Uncharacterized protein
STRING	XP_006480839.1	0.0	(Citrus sinensis)
STRING	XP_006429104.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_014917-RA