PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_014626-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 371aa MW: 42864.5 Da PI: 8.6606 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 29 | 82 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ AHYPO_014626-RA 29 PRLRWTPDLHRCFVHAIERLGGQQKATPKLVLQLMDVRGLTISHVKSHLQMYRS 82 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.481 | 25 | 85 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-31 | 25 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-15 | 27 | 84 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-24 | 29 | 83 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-8 | 30 | 81 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MESSKNNTNN NNNNNNNNGV RQYVRSKVPR LRWTPDLHRC FVHAIERLGG QQKATPKLVL 60 QLMDVRGLTI SHVKSHLQMY RSMKTDHFSR QGDKGFTQQR KQAFENHDNK NGSTCNYIIE 120 QGKQDVGLHH LSSSNLTNHV FQDQPTFSAA FLPSKRARLE ERKNKVNSSN MMMMRITPNM 180 CMSMSEEEEE EEKMRKNPKK YTSYGLVDDD YKSQKESIYN NNSKGETKIG GIIPFNQNYR 240 QQDQHFEPEN LNIIRCHQQY SLSHHALLPL HPNHSHILPF KKTMAENDQQ TYQNEAQYNY 300 KHQNSHTLFP SGNRTDEFEN ELHQNDVVSA GATQTDDNDE CSLSLSLALQ RQAKSGLLVE 360 RSSNYSSTNV S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 30 | 84 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010680052.1 | 1e-104 | PREDICTED: myb family transcription factor PHL11 | ||||
STRING | XP_010680052.1 | 1e-104 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 6e-35 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_014626-RA |