PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014513-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 362aa    MW: 40795.5 Da    PI: 8.3543
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014513-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.65.8e-2583127145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  AHYPO_014513-RA  83 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVES 127
                      79****************************************986 PP
2QLQ58.42.1e-201650236
              QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                     +FT +Q+q+L+ Q+l+yKy+aa++P+Pp+Ll+ i+
  AHYPO_014513-RA 16 PFTSTQWQELEDQALIYKYMAAGVPIPPDLLFTIK 50
                     8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.2E-121551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.7E-151649IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1261651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.41783127IPR014977WRC domain
PfamPF088791.2E-2084126IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSTTSATTIG GRTKFPFTST QWQELEDQAL IYKYMAAGVP IPPDLLFTIK RSLDSSLSSK  60
LFPYQPSPLG WNPYQMGYGK KIDPEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGKNR  120
SRKPVESPLT TTTSNASNNN NNININNNNN STTNSSLSVA ASLTNLTKNP SSTSLFSLPS  180
SDSSCNSHLL YPHSSSYNHK DYRERYYQGL KEEVGEHAFF TESSGSNIRG YNGSSLDENW  240
QIGGNLDHHH HHNSKQSGGY PNYLQQLQTN NGASTKQDKQ CYIWGRDFNC DLSMKVEDER  300
ENSFNEKTTH HFFDEWPIKG NGRGGRESSW HDSSSTTQLS ISIPSSTSSH HDFFLTNSRD  360
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666262.10.0PREDICTED: growth-regulating factor 1
TrEMBLA0A0J8B8A10.0A0A0J8B8A1_BETVU; Uncharacterized protein
STRINGXP_010666262.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-52growth-regulating factor 5